Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61862 | Canola | nucleus | 95.41 | 92.32 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 22.75 | 82.17 |
| PGSC0003DMT400029394 | Potato | nucleus | 9.17 | 76.47 |
| AT1G01060.7 | Thale cress | nucleus | 74.25 | 65.27 |
| CDX90004 | Canola | nucleus | 68.96 | 64.31 |
| CDY15205 | Canola | nucleus | 69.49 | 63.14 |
| CDX80051 | Canola | nucleus | 38.98 | 40.04 |
| KRH47757 | Soybean | nucleus | 50.79 | 38.4 |
| KRH06339 | Soybean | nucleus | 50.44 | 38.13 |
| KRH68974 | Soybean | nucleus | 48.5 | 36.76 |
| VIT_15s0048g02410.t01 | Wine grape | nucleus | 49.38 | 36.32 |
| Solyc10g005080.2.1 | Tomato | nucleus | 48.68 | 36.22 |
| Os08t0157600-01 | Rice | nucleus | 43.74 | 34.49 |
| KRG97259 | Soybean | nucleus, plastid | 49.38 | 34.19 |
| Zm00001d049543_P003 | Maize | nucleus | 41.8 | 32.92 |
| HORVU7Hr1G070870.2 | Barley | nucleus | 41.62 | 32.91 |
| EES13385 | Sorghum | nucleus | 43.21 | 32.8 |
| GSMUA_Achr1P06360_001 | Banana | nucleus | 41.27 | 32.23 |
| TraesCS7A01G299400.3 | Wheat | nucleus | 40.92 | 31.1 |
| TraesCS7B01G188000.1 | Wheat | nucleus | 40.56 | 31.08 |
| TraesCS7D01G295400.1 | Wheat | nucleus | 40.74 | 30.92 |
| CDY16939 | Canola | nucleus | 16.23 | 30.67 |
| CDY38566 | Canola | nucleus | 17.11 | 30.22 |
| CDY26169 | Canola | nucleus | 16.4 | 29.62 |
| CDY26997 | Canola | nucleus | 16.75 | 29.59 |
| CDY41563 | Canola | nucleus | 38.45 | 28.99 |
| Zm00001d024546_P001 | Maize | nucleus | 33.16 | 28.36 |
| CDY19206 | Canola | nucleus | 17.46 | 27.35 |
| CDX69388 | Canola | nucleus | 17.99 | 27.27 |
| CDY02714 | Canola | nucleus | 17.64 | 27.1 |
| CDX85462 | Canola | nucleus | 17.81 | 27.08 |
| GSMUA_Achr10P... | Banana | nucleus | 28.75 | 26.99 |
| CDX70747 | Canola | nucleus | 17.11 | 26.87 |
| CDX78737 | Canola | nucleus | 17.11 | 26.58 |
| CDX90039 | Canola | plastid | 11.99 | 25.19 |
| CDY52837 | Canola | nucleus | 13.4 | 24.84 |
| CDY15171 | Canola | nucleus | 11.64 | 24.44 |
| CDY07188 | Canola | nucleus | 12.7 | 24.16 |
| CDY56155 | Canola | nucleus | 13.76 | 24.15 |
| CDY48515 | Canola | nucleus | 12.7 | 23.53 |
| CDX80840 | Canola | nucleus | 11.11 | 23.33 |
| CDY41299 | Canola | nucleus | 11.64 | 23.24 |
| CDY11228 | Canola | nucleus | 11.11 | 22.83 |
| CDX70341 | Canola | nucleus | 11.29 | 22.46 |
| CDY51831 | Canola | vacuole | 13.76 | 22.41 |
| CDY44719 | Canola | nucleus | 11.99 | 22.37 |
| CDY41598 | Canola | nucleus | 11.82 | 22.26 |
| CDY27841 | Canola | nucleus | 10.93 | 21.68 |
| CDY10419 | Canola | nucleus | 11.46 | 12.17 |
| CDX80052 | Canola | cytosol | 0.53 | 1.39 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.1 | GO:A0A078CV92 | EnsemblPlants:CDX80750 | ProteinID:CDX80750 |
| ProteinID:CDX80750.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00134120001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF82 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0004EE52BA | SEG:seg | : | : | : | : |
Description
BnaC03g00040D
Coordinates
chrLK031823:+:10973..14684
Molecular Weight (calculated)
62014.0 Da
IEP (calculated)
6.881
GRAVY (calculated)
-0.817
Length
567 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTNTSDGPG EELLTKARKP YTITKQRERW TEDEHDRFLE ALRLYGRAWL RIQEHIGTKT AVQIRSHAQK FFTKLEKEAE AKGIKALDIE IPPPRPKRKP
101: NVPYPRKPGP SSSQCNQPQV FLDLEKVPIS EKTSTGKENQ EENCSGVNKY PLPNKVVTPG KLKTFMESSD PSLRKASADN ETSKASNVDN NMVHKENKDR
201: DDDGLHSARH HPATKTSPSA ATTTTSHQAF PAFSFCSFLH MSSTFSNLIM STLLQNPAVH AAATFAASAL PFTTNAGASS TQMSSSPPTI AAIVAATVAA
301: ATAWWASHGL LPTPVPLPAV SVPTPAAMDN VRNDQLEKQS TAFQEQNMAS KSPDSSSDDS EETGITKLKA DGDKEEVVAA LQDSNVSHKK NPVDRSSCGS
401: NTPSGSDVET DALEKEKEAD ANQPSVIELS NRRSKIRDNN NNQTTDSWKE VSQGGRIAFQ ALFARERLPQ SFSPPQAAED LNGKQISDTS MPLAHNNLNK
501: IQDSCKADQE SAVDEEPGKS LKMRETGFKP YKRCSMEAKE SQVGNANNHN DEKVCCKRLR LEAEAST
101: NVPYPRKPGP SSSQCNQPQV FLDLEKVPIS EKTSTGKENQ EENCSGVNKY PLPNKVVTPG KLKTFMESSD PSLRKASADN ETSKASNVDN NMVHKENKDR
201: DDDGLHSARH HPATKTSPSA ATTTTSHQAF PAFSFCSFLH MSSTFSNLIM STLLQNPAVH AAATFAASAL PFTTNAGASS TQMSSSPPTI AAIVAATVAA
301: ATAWWASHGL LPTPVPLPAV SVPTPAAMDN VRNDQLEKQS TAFQEQNMAS KSPDSSSDDS EETGITKLKA DGDKEEVVAA LQDSNVSHKK NPVDRSSCGS
401: NTPSGSDVET DALEKEKEAD ANQPSVIELS NRRSKIRDNN NNQTTDSWKE VSQGGRIAFQ ALFARERLPQ SFSPPQAAED LNGKQISDTS MPLAHNNLNK
501: IQDSCKADQE SAVDEEPGKS LKMRETGFKP YKRCSMEAKE SQVGNANNHN DEKVCCKRLR LEAEAST
001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
Arabidopsis Description
LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.