CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02714	Canola	nucleus	91.42	92.41
CDY16939	Canola	nucleus	66.49	82.67
CDX69388	Canola	nucleus	82.04	81.82
AT5G17300.1	Thale cress	nucleus	83.65	80.62
CDX70747	Canola	nucleus	76.14	78.67
CDX78737	Canola	nucleus	75.34	76.99
CDY38566	Canola	nucleus	33.51	38.94
CDY26997	Canola	nucleus	33.51	38.94
Solyc02g036370.2.1	Tomato	nucleus	43.43	34.91
PGSC0003DMT400055263	Potato	nucleus	44.5	34.87
CDY26169	Canola	nucleus	29.22	34.71
CDY19206	Canola	nucleus	30.83	31.77
CDX80840	Canola	nucleus	18.77	25.93
CDX90039	Canola	plastid	18.5	25.56
CDY07188	Canola	nucleus	20.38	25.5
CDY41299	Canola	nucleus	19.03	25.0
CDY15171	Canola	nucleus	17.69	24.44
CDY11228	Canola	nucleus	17.96	24.28
CDY48515	Canola	nucleus	19.3	23.53
CDY41598	Canola	nucleus	18.77	23.26
CDY52837	Canola	nucleus	19.03	23.2
CDX70341	Canola	nucleus	17.69	23.16
CDY44719	Canola	nucleus	18.5	22.7
CDY56155	Canola	nucleus	19.57	22.6
CDY27841	Canola	nucleus	16.09	20.98
CDY51831	Canola	vacuole	19.57	20.98
CDX80051	Canola	nucleus	28.15	19.02
CDX90004	Canola	nucleus	29.22	17.93
CDX80750	Canola	nucleus	27.08	17.81
CDY15205	Canola	nucleus	28.95	17.31
CDY61862	Canola	nucleus	26.54	16.89
CDY41563	Canola	nucleus	27.61	13.7
CDY10419	Canola	nucleus	18.23	12.73
CDY64825	Canola	cytosol, nucleus, plastid	4.02	9.55
CDX80052	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:A0A078D8N4	EnsemblPlants:CDX85462	ProteinID:CDX85462	ProteinID:CDX85462.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00143160001	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802
PANTHER:PTHR12802:SF60	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EDBA76
SEG:seg	:	:	:	:	:

Description

BnaA02g03510D

Coordinates

chrLK031842:+:221166..223684

Molecular Weight (calculated)

41870.7 Da

IEP (calculated)

7.240

GRAVY (calculated)

-0.910

Length

373 amino acids

Sequence
(BLAST)

001: MASSPLTANV QGDDNRVEET AEIQLNDQVF DYAPKVRKPY TITKERERWT DEEHNKFVEA LRLYGRAWRK IEEHVGTKTA VQIRSHAQKF FSKVAREASG
101: GNVSSLEPIV IPPPRPKRRP MHPYPRKLGN EGDQTSRSVS PSERDNRSPS SVLSTVESEA FGSSDSHSPN RSLSPVSSAS PPAALATTAN APEEFETLKL
201: ELFPAERLLN REEPTKQSLK LFGKTVLVSD PDMSSSPTTS TTYCKSPIQP LPRKLSTSET FPMVINPQEE RLSCWLQVPH KQEECLESEK GVQNEGSSTG
301: SNTGSVDDTG HTEKSSEPET MVCQWKFKPS ERSAFSELRR RNSESNSRGF GSYKKRKMVT QAEEQQQEIH IYL

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.