Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38566 | Canola | nucleus | 95.64 | 95.64 |
| AT5G37260.1 | Thale cress | nucleus | 75.39 | 84.32 |
| CDY16939 | Canola | nucleus | 37.69 | 40.33 |
| KRH20042 | Soybean | nucleus | 33.02 | 36.93 |
| CDY02714 | Canola | nucleus | 39.25 | 34.15 |
| CDX78737 | Canola | nucleus | 38.32 | 33.7 |
| CDX70747 | Canola | nucleus | 37.69 | 33.52 |
| KRG98008 | Soybean | nucleus | 37.69 | 33.52 |
| CDX85462 | Canola | nucleus | 38.94 | 33.51 |
| CDX69388 | Canola | nucleus | 38.32 | 32.89 |
| CDY26169 | Canola | nucleus | 30.53 | 31.21 |
| KRH17280 | Soybean | nucleus | 37.69 | 27.75 |
| KRH72927 | Soybean | nucleus | 37.69 | 27.75 |
| CDY19206 | Canola | nucleus | 30.84 | 27.35 |
| Solyc02g036370.2.1 | Tomato | nucleus | 38.94 | 26.94 |
| PGSC0003DMT400055263 | Potato | nucleus | 39.25 | 26.47 |
| VIT_04s0079g00410.t01 | Wine grape | nucleus | 39.25 | 26.3 |
| CDX90039 | Canola | plastid | 21.81 | 25.93 |
| CDY15171 | Canola | nucleus | 21.18 | 25.19 |
| CDY07188 | Canola | nucleus | 23.05 | 24.83 |
| CDY41299 | Canola | nucleus | 21.18 | 23.94 |
| CDY48515 | Canola | nucleus | 22.74 | 23.86 |
| CDX80840 | Canola | nucleus | 19.94 | 23.7 |
| CDY52837 | Canola | nucleus | 21.18 | 22.22 |
| CDX70341 | Canola | nucleus | 19.63 | 22.11 |
| CDY11228 | Canola | nucleus | 19.0 | 22.1 |
| CDY56155 | Canola | nucleus | 22.12 | 21.98 |
| CDY41598 | Canola | nucleus | 19.94 | 21.26 |
| CDY44719 | Canola | nucleus | 19.94 | 21.05 |
| CDY51831 | Canola | vacuole | 22.43 | 20.69 |
| CDY27841 | Canola | nucleus | 17.13 | 19.23 |
| CDX80750 | Canola | nucleus | 29.59 | 16.75 |
| CDX80051 | Canola | nucleus | 28.66 | 16.67 |
| CDX90004 | Canola | nucleus | 31.15 | 16.45 |
| CDY61862 | Canola | nucleus | 29.59 | 16.21 |
| CDY15205 | Canola | nucleus | 31.15 | 16.03 |
| CDY41563 | Canola | nucleus | 29.28 | 12.5 |
| CDY10419 | Canola | nucleus | 19.94 | 11.98 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 4.36 | 8.92 |
| CDX80052 | Canola | cytosol | 1.25 | 1.85 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078GP87 | UniProt:A0A078GP87 | EnsemblPlants:CDY26997 | ProteinID:CDY26997 |
| ProteinID:CDY26997.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00036781001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR12802 |
| PANTHER:PTHR12802:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EF4C8A |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g12130DBnaC06g12130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP87]
Coordinates
chrLK032198:-:191326..193367
Molecular Weight (calculated)
36031.4 Da
IEP (calculated)
7.566
GRAVY (calculated)
-0.639
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MVQNLISDES FSSTTMVMQE HCESLCDRAS DELIISSTDA FCLKTRKPYT ITKQREKWTE AEHEKFVEAL KLYGRAWRRI EEHVGTKTAV QIRSHAQKFF
101: TKVARDCGVT SEKSIEIPPP RPKRKPMHPY PRKLVIPDAK EIAYAAITGG KLVPDEDNRS PTSVLSAHGS DGFGSNSPNS SSADYQVHEL SSHTEESLSP
201: EAETKQQSLK LFGKTFVVGD YNSWTSSNDS EDVKKMSDLE TLSVRCTSSS SSSENAGTEL TQQVVVVVVS EEFKRSERSA FSQLKSSAIA MKNMKGFMPY
301: KKRMKVEENI DSLVKTSYPM W
101: TKVARDCGVT SEKSIEIPPP RPKRKPMHPY PRKLVIPDAK EIAYAAITGG KLVPDEDNRS PTSVLSAHGS DGFGSNSPNS SSADYQVHEL SSHTEESLSP
201: EAETKQQSLK LFGKTFVVGD YNSWTSSNDS EDVKKMSDLE TLSVRCTSSS SSSENAGTEL TQQVVVVVVS EEFKRSERSA FSQLKSSAIA MKNMKGFMPY
301: KKRMKVEENI DSLVKTSYPM W
001: MAMQERCESL CSDELISSSD AFYLKTRKPY TITKQREKWT EAEHEKFVEA LKLYGRAWRR IEEHVGTKTA VQIRSHAQKF FTKVARDFGV SSESIEIPPP
101: RPKRKPMHPY PRKLVIPDAK EMVYAELTGS KLIQDEDNRS PTSVLSAHGS DGLGSIGSNS PNSSSAELSS HTEESLSLEA ETKQSLKLFG KTFVVGDYNS
201: SMSCDDSEDG KKKLYSETQS LQCSSSTSEN AETEVVVSEF KRSERSAFSQ LKSSVTEMNN MRGFMPYKKR VKVEENIDNV KLSYPLW
101: RPKRKPMHPY PRKLVIPDAK EMVYAELTGS KLIQDEDNRS PTSVLSAHGS DGLGSIGSNS PNSSSAELSS HTEESLSLEA ETKQSLKLFG KTFVVGDYNS
201: SMSCDDSEDG KKKLYSETQS LQCSSSTSEN AETEVVVSEF KRSERSAFSQ LKSSVTEMNN MRGFMPYKKR VKVEENIDNV KLSYPLW
Arabidopsis Description
RVE2Protein REVEILLE 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K5X6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.