Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005751.1-P | Field mustard | nucleus | 96.74 | 94.35 |
| CDX80840 | Canola | nucleus | 90.22 | 92.22 |
| CDX70341 | Canola | nucleus | 89.13 | 86.32 |
| AT5G02840.1 | Thale cress | nucleus | 85.14 | 80.2 |
| CDY41598 | Canola | nucleus | 66.3 | 60.8 |
| CDY41299 | Canola | nucleus | 62.32 | 60.56 |
| CDY44719 | Canola | nucleus | 66.67 | 60.53 |
| VIT_08s0040g03220.t01 | Wine grape | nucleus | 58.33 | 56.89 |
| PGSC0003DMT400028711 | Potato | nucleus | 58.7 | 56.64 |
| Solyc10g084370.1.1 | Tomato | nucleus | 60.14 | 56.08 |
| KRH32383 | Soybean | plastid | 58.7 | 55.1 |
| KRH19794 | Soybean | nucleus | 59.06 | 54.15 |
| KRG95914 | Soybean | nucleus | 55.8 | 53.29 |
| KRH67632 | Soybean | nucleus | 57.61 | 53.18 |
| CDX90039 | Canola | plastid | 45.29 | 46.3 |
| CDY15171 | Canola | nucleus | 44.57 | 45.56 |
| CDY52837 | Canola | nucleus | 48.91 | 44.12 |
| CDY56155 | Canola | nucleus | 49.28 | 42.11 |
| CDY10419 | Canola | nucleus | 80.43 | 41.57 |
| CDY07188 | Canola | nucleus | 43.84 | 40.6 |
| CDY27841 | Canola | nucleus | 42.03 | 40.56 |
| CDY48515 | Canola | nucleus | 44.2 | 39.87 |
| CDY51831 | Canola | vacuole | 49.28 | 39.08 |
| CDY16939 | Canola | nucleus | 23.55 | 21.67 |
| CDY38566 | Canola | nucleus | 22.83 | 19.63 |
| CDY26997 | Canola | nucleus | 22.1 | 19.0 |
| CDY02714 | Canola | nucleus | 24.64 | 18.43 |
| CDX70747 | Canola | nucleus | 23.55 | 18.01 |
| CDX85462 | Canola | nucleus | 24.28 | 17.96 |
| CDX69388 | Canola | nucleus | 24.28 | 17.91 |
| CDX78737 | Canola | nucleus | 23.55 | 17.81 |
| CDY26169 | Canola | nucleus | 19.93 | 17.52 |
| CDY19206 | Canola | nucleus | 19.93 | 15.19 |
| CDX80051 | Canola | nucleus | 23.19 | 11.59 |
| CDY61862 | Canola | nucleus | 23.91 | 11.26 |
| CDX90004 | Canola | nucleus | 24.64 | 11.18 |
| CDX80750 | Canola | nucleus | 22.83 | 11.11 |
| CDY15205 | Canola | nucleus | 24.64 | 10.9 |
| CDY41563 | Canola | nucleus | 22.83 | 8.38 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 0.36 | 0.64 |
| CDX80052 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.6.2 | GO:A0A078FGP4 | UniProt:A0A078FGP4 | EnsemblPlants:CDY11228 |
| ProteinID:CDY11228 | ProteinID:CDY11228.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00049249001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12802 | PANTHER:PTHR12802:SF81 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| UniParc:UPI0004EE4B23 | SEG:seg | : | : | : | : |
Description
BnaA03g00640DBnaA03g00640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGP4]
Coordinates
chrLK032010:+:291251..293418
Molecular Weight (calculated)
30457.7 Da
IEP (calculated)
5.055
GRAVY (calculated)
-0.529
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSSLSSNPV ETSTDLTETT TEAPEKKVRK AYTISKSRQS WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVEKNG TFAHVPPPRP
101: KRKAAHPYPQ KASKNAQMSL HVSMSFPPQI NDVPGYPSWD DDTSALLSIA VSEVILPKDE IDTLFVIELN GSTSAVSPSA SGIGSSSRTL SDSEGLTPVN
201: QAPSMQGLPD FAEVYNFIGS VFDPDSKGRM KKLKEMDPIN FETVLLLMRN LTVNMSNPDF EPSSDAAEEG SEHLSS
101: KRKAAHPYPQ KASKNAQMSL HVSMSFPPQI NDVPGYPSWD DDTSALLSIA VSEVILPKDE IDTLFVIELN GSTSAVSPSA SGIGSSSRTL SDSEGLTPVN
201: QAPSMQGLPD FAEVYNFIGS VFDPDSKGRM KKLKEMDPIN FETVLLLMRN LTVNMSNPDF EPSSDAAEEG SEHLSS
001: MTSTNPVVAE VIPAETSTDA TETTIATTEA GEAPEKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS
Arabidopsis Description
RVE4LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.