Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006394.1-P | Field mustard | nucleus | 86.98 | 86.26 |
| CDX78737 | Canola | nucleus | 85.87 | 84.93 |
| CDY16939 | Canola | nucleus | 67.31 | 81.0 |
| CDY02714 | Canola | nucleus | 79.78 | 78.05 |
| CDX69388 | Canola | nucleus | 80.06 | 77.27 |
| AT5G17300.1 | Thale cress | nucleus | 81.72 | 76.23 |
| CDX85462 | Canola | nucleus | 78.67 | 76.14 |
| CDY38566 | Canola | nucleus | 33.8 | 38.01 |
| CDY26997 | Canola | nucleus | 33.52 | 37.69 |
| CDY26169 | Canola | nucleus | 30.75 | 35.35 |
| PGSC0003DMT400055263 | Potato | nucleus | 44.04 | 33.4 |
| Solyc02g036370.2.1 | Tomato | nucleus | 42.66 | 33.19 |
| CDY19206 | Canola | nucleus | 31.86 | 31.77 |
| CDY07188 | Canola | nucleus | 21.33 | 25.84 |
| CDX80840 | Canola | nucleus | 18.84 | 25.19 |
| CDY41299 | Canola | nucleus | 19.39 | 24.65 |
| CDX90039 | Canola | plastid | 18.28 | 24.44 |
| CDY48515 | Canola | nucleus | 20.5 | 24.18 |
| CDY11228 | Canola | nucleus | 18.01 | 23.55 |
| CDY15171 | Canola | nucleus | 17.45 | 23.33 |
| CDX70341 | Canola | nucleus | 18.01 | 22.81 |
| CDY41598 | Canola | nucleus | 18.84 | 22.59 |
| CDY44719 | Canola | nucleus | 18.56 | 22.04 |
| CDY52837 | Canola | nucleus | 18.56 | 21.9 |
| CDY56155 | Canola | nucleus | 19.39 | 21.67 |
| CDY51831 | Canola | vacuole | 19.67 | 20.4 |
| CDY27841 | Canola | nucleus | 15.51 | 19.58 |
| CDX80750 | Canola | nucleus | 26.87 | 17.11 |
| CDX80051 | Canola | nucleus | 26.04 | 17.03 |
| CDX90004 | Canola | nucleus | 27.98 | 16.61 |
| CDY61862 | Canola | nucleus | 26.32 | 16.21 |
| CDY15205 | Canola | nucleus | 27.98 | 16.19 |
| CDY41563 | Canola | nucleus | 25.76 | 12.37 |
| CDY10419 | Canola | nucleus | 18.01 | 12.17 |
| CDY64825 | Canola | cytosol, nucleus, plastid | 4.16 | 9.55 |
| CDX80052 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:A0A078C1Y9 | EnsemblPlants:CDX70747 | ProteinID:CDX70747 | ProteinID:CDX70747.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00140622001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR12802 |
| PANTHER:PTHR12802:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EC07D3 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g08310D
Coordinates
chrLK031791:-:1845788..1847482
Molecular Weight (calculated)
40178.8 Da
IEP (calculated)
8.586
GRAVY (calculated)
-0.865
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MKSPSLTVNA QGTKASPSSR VEETSDTQIQ FNDYAPKVRK PYIITKERER WTDEEHYKFV EALKLHGRAW RRIQGHVGTK TAVQIRSHAQ KFFSKVAREA
101: TGGSNGSSVE PIVIPPPRPK RRPMHPYPRK LGNEGDQASR SVSPSERDNQ SPTSVLSPVG SEALDSSDSH SPDRSLPPVS SASPQAALAS TSNAPEELET
201: LKLELFPRER SIKEPTKKSL KLFGKIVLVS DSDMSSSLTT STAYCKSPIQ PLPQEELLSC WIQVPPRKEE VENRCLDSEK AFQNEGSSTG SNTGSVDDTG
301: HTDKSSEPET MVCQWEFKPS ERSAFSELRR ETSESNSRGF SPYKKRKTVI EAAQEEIRLY L
101: TGGSNGSSVE PIVIPPPRPK RRPMHPYPRK LGNEGDQASR SVSPSERDNQ SPTSVLSPVG SEALDSSDSH SPDRSLPPVS SASPQAALAS TSNAPEELET
201: LKLELFPRER SIKEPTKKSL KLFGKIVLVS DSDMSSSLTT STAYCKSPIQ PLPQEELLSC WIQVPPRKEE VENRCLDSEK AFQNEGSSTG SNTGSVDDTG
301: HTDKSSEPET MVCQWEFKPS ERSAFSELRR ETSESNSRGF SPYKKRKTVI EAAQEEIRLY L
001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL
Arabidopsis Description
RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.