CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71824
CDX77739
CDX80051	nucleus
CDX80052	nucleus
CDX90462
CDY09612
CDY28980
CDY40582
CDY41181
CDY41563	nucleus
CDY64765
CDY70654
CDY71648

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46830.1	CDX80051	AT2G46830.1	14978263
AT2G46830.1	CDX80052	AT2G46830.1	14978263
AT2G46830.1	CDY41563	AT2G46830.1	14978263
AT2G46830.1	CDX80051	AT2G46830.1	22715042
AT2G46830.1	CDX80052	AT2G46830.1	22715042
AT2G46830.1	CDY41563	AT2G46830.1	22715042
AT2G46830.1	CDX80051	AT2G46830.1	22715042
AT2G46830.1	CDX80052	AT2G46830.1	22715042
AT2G46830.1	CDY41563	AT2G46830.1	22715042
AT2G46830.1	CDX71824	AT3G60250.1	10535927
AT2G46830.1	CDY41181	AT3G60250.1	10535927
AT2G46830.1	CDY64765	AT3G60250.1	10535927
AT2G46830.1	CDX71824	AT3G60250.1	14978263
AT2G46830.1	CDY41181	AT3G60250.1	14978263
AT2G46830.1	CDY64765	AT3G60250.1	14978263
AT2G46830.1	CDX71824	AT3G60250.1	9724822
AT2G46830.1	CDY41181	AT3G60250.1	9724822
AT2G46830.1	CDY64765	AT3G60250.1	9724822
AT2G46830.1	CDX90462	AT4G17640.1	9724822
AT2G46830.1	CDY09612	AT4G17640.1	9724822
AT2G46830.1	CDX77739	AT5G47080.1	9724822
AT2G46830.1	CDY28980	AT5G47080.1	9724822
AT2G46830.1	CDY40582	AT5G47080.1	9724822
AT2G46830.1	CDY70654	AT5G67380.1	14978263
AT2G46830.1	CDY71648	AT5G67380.1	14978263
AT2G46830.1	CDY70654	AT5G67380.1	9724822
AT2G46830.1	CDY71648	AT5G67380.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029394	Potato	nucleus	9.78	79.41
AT2G46830.1	Thale cress	nucleus	80.25	72.86
CDY41563	Canola	nucleus	88.59	65.03
CDX80750	Canola	nucleus	40.04	38.98
CDY61862	Canola	nucleus	40.76	38.4
CDX90004	Canola	nucleus	41.49	37.66
CDY64825	Canola	cytosol, nucleus, plastid	10.69	37.58
CDY15205	Canola	nucleus	41.49	36.7
VIT_15s0048g02410.t01	Wine grape	nucleus	51.09	36.58
KRH06339	Soybean	nucleus	47.64	35.07
KRH47757	Soybean	nucleus	47.28	34.8
KRH68974	Soybean	nucleus	46.74	34.49
Solyc10g005080.2.1	Tomato	nucleus	46.2	33.46
CDY16939	Canola	nucleus	17.57	32.33
KRG97259	Soybean	nucleus, plastid	47.28	31.87
Os08t0157600-01	Rice	nucleus	38.95	29.9
GSMUA_Achr1P06360_001	Banana	nucleus	39.13	29.75
CDY38566	Canola	nucleus	17.21	29.59
Zm00001d049543_P003	Maize	nucleus	38.41	29.44
HORVU7Hr1G070870.2	Barley	nucleus	38.22	29.43
EES13385	Sorghum	nucleus	39.67	29.32
CDY26169	Canola	nucleus	16.3	28.66
CDY26997	Canola	nucleus	16.67	28.66
CDX90039	Canola	plastid	13.95	28.52
CDX85462	Canola	nucleus	19.02	28.15
CDY15171	Canola	nucleus	13.77	28.15
TraesCS7B01G188000.1	Wheat	nucleus	37.5	27.97
TraesCS7A01G299400.3	Wheat	nucleus	37.5	27.75
TraesCS7D01G295400.1	Wheat	nucleus	37.32	27.58
CDX69388	Canola	nucleus	18.66	27.54
CDY02714	Canola	nucleus	18.3	27.37
GSMUA_Achr10P...	Banana	nucleus	28.8	26.32
CDX70747	Canola	nucleus	17.03	26.04
CDY07188	Canola	nucleus	13.77	25.5
CDX78737	Canola	nucleus	16.85	25.48
CDY19206	Canola	nucleus	16.67	25.41
CDY52837	Canola	nucleus	13.77	24.84
CDY41299	Canola	nucleus	12.5	24.3
CDY48515	Canola	nucleus	13.22	23.86
CDY56155	Canola	nucleus	13.95	23.84
Zm00001d024546_P001	Maize	nucleus	28.62	23.83
CDX80840	Canola	nucleus	11.41	23.33
CDY41598	Canola	nucleus	12.68	23.26
CDY11228	Canola	nucleus	11.59	23.19
CDX70341	Canola	nucleus	11.96	23.16
CDY44719	Canola	nucleus	12.68	23.03
CDY51831	Canola	vacuole	14.13	22.41
CDY27841	Canola	nucleus	11.59	22.38
CDY10419	Canola	nucleus	12.32	12.73
CDX80052	Canola	cytosol	0.54	1.39

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.1	GO:A0A078CSC5	EnsemblPlants:CDX80051	ProteinID:CDX80051
ProteinID:CDX80051.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00132937001	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802
PANTHER:PTHR12802:SF43	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0004EDAE9F
SEG:seg	:	:	:	:	:

Description

BnaA05g01050D

Coordinates

chrLK031819:+:1569573..1572428

Molecular Weight (calculated)

60242.3 Da

IEP (calculated)

6.471

GRAVY (calculated)

-0.851

Length

552 amino acids

Sequence
(BLAST)

001: METNSSGEDL VVKTRKPYTI TKQRERWTEE EHNRFLDALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VPVAQTLDIA IPPPRPKRKP
101: NNPYPRKTGT GSLPISKPGL NDGKESLGSG KVSLPETTNE DLQEDNCSDC LTHQHLSAAS NASTFLEFLP SREQGNNKES NSANYSEPQT YPRHIPLLVP
201: LGSSITTSLS HAPPSDPDEN SHHPHTVSGH HQSFPDHIMS TLLQTPALYT AASFASTFGG GGPQGNLAAM AAATVAAASA WWAANGMLPL CAPFSSGGLT
301: CHPPATAYGL SGEVDHTKTV DQEHSEASKA RSSLESEEAK NGSKPDCHHH PCAATETDAK GSDGARDRKQ VDRSSCGSNT PSSSDDVEAD ALVERQENGG
401: TTNEEVKEVD GDTTNNPQTS ESNARRSRIS SSNLADPWKS VSDEGRIAFR ALFAREVLPQ SFTYKREEGQ QQRYPMELDL NSAADDQEEN RNIAFLGASK
501: QQLLSRGRTG FKPYKRCSME AKESRVISNT NPIISVEQKD PKRIRLETQT ST

Best Arabidopsis Sequence Match ( AT2G46830.1 )
(BLAST)

001: METNSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFIEALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VAMGQALDIA IPPPRPKRKP
101: NNPYPRKTGS GTILMSKTGV NDGKESLGSE KVSHPEMANE DRQQSKPEEK TLQEDNCSDC FTHQYLSAAS SMNKSCIETS NASTFREFLP SREEGSQNNR
201: VRKESNSDLN AKSLENGNEQ GPQTYPMHIP VLVPLGSSIT SSLSHPPSEP DSHPHTVAGD YQSFPNHIMS TLLQTPALYT AATFASSFWP PDSSGGSPVP
301: GNSPPNLAAM AAATVAAASA WWAANGLLPL CAPLSSGGFT SHPPSTFGPS CDVEYTKAST LQHGSVQSRE QEHSEASKAR SSLDSEDVEN KSKPVCHEQP
401: SATPESDAKG SDGAGDRKQV DRSSCGSNTP SSSDDVEADA SERQEDGTNG EVKETNEDTN KPQTSESNAR RSRISSNITD PWKSVSDEGR IAFQALFSRE
501: VLPQSFTYRE EHREEEQQQQ EQRYPMALDL NFTAQLTPVD DQEEKRNTGF LGIGLDASKL MSRGRTGFKP YKRCSMEAKE SRILNNNPII HVEQKDPKRM
601: RLETQAST

Arabidopsis Description

CCA1Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.