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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G46830.1 TraesCS7A01G299400.3 AT2G46830.1 14978263
AT2G46830.1 TraesCS7B01G188000.1 AT2G46830.1 14978263
AT2G46830.1 TraesCS7D01G295400.1 AT2G46830.1 14978263
AT2G46830.1 TraesCS7A01G299400.3 AT2G46830.1 22715042
AT2G46830.1 TraesCS7B01G188000.1 AT2G46830.1 22715042
AT2G46830.1 TraesCS7D01G295400.1 AT2G46830.1 22715042
AT2G46830.1 TraesCS7A01G299400.3 AT2G46830.1 22715042
AT2G46830.1 TraesCS7B01G188000.1 AT2G46830.1 22715042
AT2G46830.1 TraesCS7D01G295400.1 AT2G46830.1 22715042
AT2G46830.1 TraesCS1A01G215700.1 AT3G60250.1 10535927
AT2G46830.1 TraesCS1B01G229200.1 AT3G60250.1 10535927
AT2G46830.1 TraesCS2A01G245100.1 AT3G60250.1 10535927
AT2G46830.1 TraesCS2A01G390500.1 AT3G60250.1 10535927
AT2G46830.1 TraesCS2B01G408900.1 AT3G60250.1 10535927
AT2G46830.1 TraesCS2D01G242000.2 AT3G60250.1 10535927
AT2G46830.1 TraesCS2D01G388200.1 AT3G60250.1 10535927
AT2G46830.1 TraesCS4B01G379300.1 AT3G60250.1 10535927
AT2G46830.1 TraesCS5A01G545600.3 AT3G60250.1 10535927
AT2G46830.1 TraesCSU01G007300.1 AT3G60250.1 10535927
AT2G46830.1 TraesCSU01G129600.1 AT3G60250.1 10535927
AT2G46830.1 TraesCS1A01G215700.1 AT3G60250.1 14978263
AT2G46830.1 TraesCS1B01G229200.1 AT3G60250.1 14978263
AT2G46830.1 TraesCS2A01G245100.1 AT3G60250.1 14978263
AT2G46830.1 TraesCS2A01G390500.1 AT3G60250.1 14978263
AT2G46830.1 TraesCS2B01G408900.1 AT3G60250.1 14978263
AT2G46830.1 TraesCS2D01G242000.2 AT3G60250.1 14978263
AT2G46830.1 TraesCS2D01G388200.1 AT3G60250.1 14978263
AT2G46830.1 TraesCS4B01G379300.1 AT3G60250.1 14978263
AT2G46830.1 TraesCS5A01G545600.3 AT3G60250.1 14978263
AT2G46830.1 TraesCSU01G007300.1 AT3G60250.1 14978263
AT2G46830.1 TraesCSU01G129600.1 AT3G60250.1 14978263
AT2G46830.1 TraesCS1A01G215700.1 AT3G60250.1 9724822
AT2G46830.1 TraesCS1B01G229200.1 AT3G60250.1 9724822
AT2G46830.1 TraesCS2A01G245100.1 AT3G60250.1 9724822
AT2G46830.1 TraesCS2A01G390500.1 AT3G60250.1 9724822
AT2G46830.1 TraesCS2B01G408900.1 AT3G60250.1 9724822
AT2G46830.1 TraesCS2D01G242000.2 AT3G60250.1 9724822
AT2G46830.1 TraesCS2D01G388200.1 AT3G60250.1 9724822
AT2G46830.1 TraesCS4B01G379300.1 AT3G60250.1 9724822
AT2G46830.1 TraesCS5A01G545600.3 AT3G60250.1 9724822
AT2G46830.1 TraesCSU01G007300.1 AT3G60250.1 9724822
AT2G46830.1 TraesCSU01G129600.1 AT3G60250.1 9724822
AT2G46830.1 TraesCS1A01G215700.1 AT4G17640.1 9724822
AT2G46830.1 TraesCS1B01G229200.1 AT4G17640.1 9724822
AT2G46830.1 TraesCS2A01G245100.1 AT4G17640.1 9724822
AT2G46830.1 TraesCS2A01G390500.1 AT4G17640.1 9724822
AT2G46830.1 TraesCS2B01G408900.1 AT4G17640.1 9724822
AT2G46830.1 TraesCS2D01G242000.2 AT4G17640.1 9724822
AT2G46830.1 TraesCS2D01G388200.1 AT4G17640.1 9724822
AT2G46830.1 TraesCS4B01G379300.1 AT4G17640.1 9724822
AT2G46830.1 TraesCS5A01G545600.3 AT4G17640.1 9724822
AT2G46830.1 TraesCSU01G007300.1 AT4G17640.1 9724822
AT2G46830.1 TraesCSU01G129600.1 AT4G17640.1 9724822
AT2G46830.1 TraesCS1A01G215700.1 AT5G47080.1 9724822
AT2G46830.1 TraesCS1B01G229200.1 AT5G47080.1 9724822
AT2G46830.1 TraesCS2A01G245100.1 AT5G47080.1 9724822
AT2G46830.1 TraesCS2A01G390500.1 AT5G47080.1 9724822
AT2G46830.1 TraesCS2B01G408900.1 AT5G47080.1 9724822
AT2G46830.1 TraesCS2D01G242000.2 AT5G47080.1 9724822
AT2G46830.1 TraesCS2D01G388200.1 AT5G47080.1 9724822
AT2G46830.1 TraesCS4B01G379300.1 AT5G47080.1 9724822
AT2G46830.1 TraesCS5A01G545600.3 AT5G47080.1 9724822
AT2G46830.1 TraesCSU01G007300.1 AT5G47080.1 9724822
AT2G46830.1 TraesCSU01G129600.1 AT5G47080.1 9724822
AT2G46830.1 TraesCS2A01G263400.1 AT5G67380.1 14978263
AT2G46830.1 TraesCS2B01G278700.2 AT5G67380.1 14978263
AT2G46830.1 TraesCS2D01G260500.1 AT5G67380.1 14978263
AT2G46830.1 TraesCS4A01G049900.1 AT5G67380.1 14978263
AT2G46830.1 TraesCS4B01G254800.1 AT5G67380.1 14978263
AT2G46830.1 TraesCS4D01G254600.1 AT5G67380.1 14978263
AT2G46830.1 TraesCS5A01G400100.1 AT5G67380.1 14978263
AT2G46830.1 TraesCS5B01G404900.1 AT5G67380.1 14978263
AT2G46830.1 TraesCS5D01G410000.1 AT5G67380.1 14978263
AT2G46830.1 TraesCS2A01G263400.1 AT5G67380.1 9724822
AT2G46830.1 TraesCS2B01G278700.2 AT5G67380.1 9724822
AT2G46830.1 TraesCS2D01G260500.1 AT5G67380.1 9724822
AT2G46830.1 TraesCS4A01G049900.1 AT5G67380.1 9724822
AT2G46830.1 TraesCS4B01G254800.1 AT5G67380.1 9724822
AT2G46830.1 TraesCS4D01G254600.1 AT5G67380.1 9724822
AT2G46830.1 TraesCS5A01G400100.1 AT5G67380.1 9724822
AT2G46830.1 TraesCS5B01G404900.1 AT5G67380.1 9724822
AT2G46830.1 TraesCS5D01G410000.1 AT5G67380.1 9724822
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G299400.3 Wheat nucleus 97.84 97.05
TraesCS7D01G295400.1 Wheat nucleus 97.7 96.79
HORVU7Hr1G070870.2 Barley nucleus 89.05 91.91
PGSC0003DMT400029394 Potato nucleus 7.3 79.41
Os08t0157600-01 Rice nucleus 70.14 72.18
Zm00001d049543_P003 Maize nucleus 65.81 67.64
EES13385 Sorghum nucleus 66.76 66.13
CDY61862 Canola nucleus 32.16 40.61
CDX80750 Canola nucleus 31.08 40.56
Bra030496.1-P Field mustard nucleus 32.03 40.44
Bra033291.1-P Field mustard nucleus 31.62 38.55
CDX90004 Canola nucleus 31.62 38.49
AT2G46830.1 Thale cress nucleus 31.49 38.32
GSMUA_Achr1P06360_001 Banana nucleus 37.3 38.02
CDY15205 Canola nucleus 31.89 37.82
CDX80051 Canola nucleus 27.97 37.5
KRH06339 Soybean nucleus 37.43 36.93
KRH47757 Soybean nucleus 37.43 36.93
AT1G01060.7 Thale cress nucleus 32.16 36.9
KRH68974 Soybean nucleus 36.35 35.96
VIT_15s0048g02410.t01 Wine grape nucleus 37.43 35.93
Solyc10g005080.2.1 Tomato nucleus 34.59 33.6
CDY64825 Canola cytosol, nucleus, plastid 7.03 33.12
GSMUA_Achr10P... Banana nucleus 26.76 32.78
KRG97259 Soybean nucleus, plastid 35.68 32.23
TraesCS6B01G266800.3 Wheat nucleus 11.22 29.02
TraesCS2B01G478700.1 Wheat nucleus 15.68 27.95
TraesCS6B01G288500.1 Wheat nucleus 16.89 27.9
CDY41563 Canola nucleus 27.84 27.39
TraesCS1B01G129800.1 Wheat mitochondrion 7.84 26.24
TraesCS7B01G478200.1 Wheat nucleus 15.54 23.81
TraesCS7B01G372500.1 Wheat nucleus 10.41 22.58
TraesCS3B01G151500.1 Wheat nucleus 8.51 22.03
CDX80052 Canola cytosol 0.14 0.46
Protein Annotations
EnsemblPlants:TraesCS7B01G188000.1EnsemblPlantsGene:TraesCS7B01G188000Gene3D:1.10.10.60GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:Myb_dom_plantsInterPro:SANT/Myb
PANTHER:PTHR12802PANTHER:PTHR12802:SF43PFAM:PF00249PFscan:PS51294SEG:segSMART:SM00717
SUPFAM:SSF46689TIGR:cd00167TIGRFAMs:TIGR01557MapMan:15.5.2.2MapMan:27.1.1:
Description
No Description!
Coordinates
chr7B:-:317228074..317237268
Molecular Weight (calculated)
80669.7 Da
IEP (calculated)
6.675
GRAVY (calculated)
-0.770
Length
740 amino acids
Sequence
(BLAST)
001: MEINSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE EHVGTKTAVQ IRSHAQKFFT KLEKEAINNG TSPGQAHDID IPPPRPKRKP
101: NCPYPRKGCL SSETPTREVP KSSVSLSNSN AEMASNGTLQ LTCIQKLQRK ELSENGSCSE VINIFREAPS ASFSSSNKSS SNHGVSGGIE PTKTENKDIA
201: TMERKSTSID VGKDVKDIND QEMERNNRVH ISSNYGRSHE DCLDNSMKHM QLKPNTVETT YTGQHAASAP LYQMNKTEAT GAPDPGTEGS HPDQTSDQAG
301: GANGSMDCIH PTLPVDPKIG SSSTAQPFPH NYAGFAPTMQ CHCNQDANRS SLNMSSTFSN MLVSTLLSNP TVHAAARLAA SYWPAADSNI PVGPNQEVFA
401: ENAQGRHIGS PPSMASVVAA TVAAASAWWA TQGLLPLFAP PMAFPFVPVP TASFPIADVQ RATENCPVDN APKECQVAQE QGQPEAMIVG ASSGSDESGK
501: GEVSPHTDKV ETTPPTGAET SDAFGNKKKQ DRSSCGSNTP SSSDVEAEHV PENQDQANDK TQQACCSNSS AGDMNHRRFR NISSTNDSWK EVSEEGRMAF
601: DKLFSRGKLP QSFSPPQAEG LKVVPRGEQD EATTVTVDLN KSAAVIDHEL DTLVGPRAAT FPIELSHLNM KSRRTGFKPY KRCSVEAKEN RVPAADEVSE
701: KHQMETDEKL KHLYSTVNQQ NILMDLASHP RPKHHMDQQK
Best Arabidopsis Sequence Match ( AT1G01060.4 )
(BLAST)
001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
Arabidopsis Description
LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.