Factsheet for Bra009562.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70341	Canola	nucleus	87.18	95.44
Bra005751.1-P	Field mustard	nucleus	76.6	84.45
AT5G02840.1	Thale cress	nucleus	76.6	81.57
Bra034074.1-P	Field mustard	nucleus	57.37	68.06
Bra029778.1-P	Field mustard	nucleus	62.5	64.14
VIT_08s0040g03220.t01	Wine grape	nucleus	54.49	60.07
PGSC0003DMT400028711	Potato	nucleus	54.17	59.09
KRH32383	Soybean	plastid	55.13	58.5
Solyc10g084370.1.1	Tomato	nucleus	55.45	58.45
KRH19794	Soybean	nucleus	55.45	57.48
KRG95914	Soybean	nucleus	52.88	57.09
KRH67632	Soybean	nucleus	54.49	56.86
CDY10419	Canola	nucleus	85.58	50.0
Bra033257.1-P	Field mustard	plastid	41.03	47.41
Bra003117.1-P	Field mustard	nucleus	45.19	46.08
Bra029111.1-P	Field mustard	nucleus	45.51	44.38
Bra037365.1-P	Field mustard	nucleus	40.71	37.46
Bra024430.1-P	Field mustard	mitochondrion, nucleus	14.1	20.56
Bra039503.1-P	Field mustard	nucleus	20.19	18.92
Bra006394.1-P	Field mustard	nucleus	20.83	17.86
Bra023610.1-P	Field mustard	nucleus	21.15	17.79
Bra008563.1-P	Field mustard	nucleus	20.19	17.75
Bra025914.1-P	Field mustard	nucleus	18.91	17.66
Bra004503.1-P	Field mustard	nucleus	21.47	12.14
Bra033291.1-P	Field mustard	nucleus	22.76	11.7
Bra030496.1-P	Field mustard	nucleus	21.79	11.6
Bra004502.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	EnsemblPlantsGene:Bra009562	EnsemblPlants:Bra009562.1	EnsemblPlants:Bra009562.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CZB5
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF81
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002547C37	SEG:seg

Description

AT5G02840 (E=7e-099) LCL1 | LCL1 (LHY/CCA1-like 1); DNA binding / transcription factor

Coordinates

chrA10:-:17230004..17231981

Molecular Weight (calculated)

34656.2 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.463

Length

312 amino acids

Sequence
(BLAST)

001: MTSSLSSNPM VAEEERPMET STDLIETTTT EAPEKKVRKA YTITKSRESW TEGEHDKFLE ALQLFDRDWK KIEDFVGSKT VIQIRSHAQK YFLKVQKNGT
101: LAHVPPPRPK RKAAHPYPQK ASKNAQMSLH VSMSFPTQIN NVPGFTSWDD DTSALLNIAV SEVILPKDEL TTLYVIESNG STSGGSPSAS GIGSSSRTLS
201: DSKTANQAPS MHGLPDFAEV YNFIGSVFDP DSKGRMKKLK EMDPINFETV LLLMRNLTVN LSNPDFEPAA HELLTSGLLQ QMAVRDPWSR TKQVIYLLGE
301: LLAHNNCLSA IK

Best Arabidopsis Sequence Match ( AT5G02840.1 )
(BLAST)

001: MTSTNPVVAE VIPAETSTDA TETTIATTEA GEAPEKKVRK AYTITKSRES WTEGEHDKFL EALQLFDRDW KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG
101: TLAHVPPPRP KRKAAHPYPQ KASKNAQMSL HVSMSFPTQI NNLPGYTPWD DDTSALLNIA VSGVIPPEDE LDTLCGAEVD VGSNDMISET SPSASGIGSS
201: SRTLSDSKGL RLAKQAPSMH GLPDFAEVYN FIGSVFDPDS KGRMKKLKEM DPINFETVLL LMRNLTVNLS NPDFEPTSEY VDAAEEGHEH LSS

Arabidopsis Description

RVE4LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.