Factsheet for Bra008563.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69388	Canola	nucleus	99.72	94.65
Bra023610.1-P	Field mustard	nucleus	84.23	80.59
Bra006394.1-P	Field mustard	nucleus	77.46	75.55
AT5G17300.1	Thale cress	nucleus	81.41	74.68
Bra039503.1-P	Field mustard	nucleus	34.08	36.34
Solyc02g036370.2.1	Tomato	nucleus	43.94	33.62
PGSC0003DMT400055263	Potato	nucleus	45.07	33.61
Bra025914.1-P	Field mustard	nucleus	30.99	32.93
Bra024430.1-P	Field mustard	mitochondrion, nucleus	19.44	32.24
Bra034074.1-P	Field mustard	nucleus	19.15	25.86
Bra033257.1-P	Field mustard	plastid	18.87	24.81
Bra005751.1-P	Field mustard	nucleus	18.87	23.67
Bra003117.1-P	Field mustard	nucleus	20.28	23.53
Bra029111.1-P	Field mustard	nucleus	20.56	22.81
Bra029778.1-P	Field mustard	nucleus	19.44	22.7
Bra037365.1-P	Field mustard	nucleus	20.56	21.53
Bra009562.1-P	Field mustard	nucleus	17.75	20.19
Bra004503.1-P	Field mustard	nucleus	27.89	17.93
Bra033291.1-P	Field mustard	nucleus	30.14	17.63
Bra030496.1-P	Field mustard	nucleus	27.61	16.72
Bra004502.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	EnsemblPlantsGene:Bra008563	EnsemblPlants:Bra008563.1	EnsemblPlants:Bra008563.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CWG6	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF60	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025444CC	SEG:seg	:

Description

AT5G17300 (E=2e-106) | myb family transcription factor

Coordinates

chrA10:+:12836046..12837802

Molecular Weight (calculated)

39326.1 Da

IEP (calculated)

8.949

GRAVY (calculated)

-0.846

Length

355 amino acids

Sequence
(BLAST)

001: MASSPLTTNV QVRKPYTITK ERERWTDEEH NKFVEALKLH GRAWRKIEEH LGTKTAVQIR SHAQKFFSKV AKEASGGNGS SLEPILIPPP RPKRKPMHPY
101: PRKLGNEGDQ ASRSVSPSER DNGSPTSVLS TVGSEALGSS DSHSPNRSLS PVSSASPPAA PLATTENAPE ELETSATKLE LFPRESLVKE PKKQSLRLFG
201: NTVLVSDSGV SSSLTTYCKS PIIQPLPRKL SRSETFPMVI NPQEKLLSCW IQQVPPKQEE VENRCSDSEK AVQNEGSSTG SNTGSVDDTG HTDKSSEPPE
301: TMVCRWEFKA SERSAFSELR RKNSESNSRG FGPYKKRKMV IEAEQEEQEQ IRLCL

Best Arabidopsis Sequence Match ( AT5G17300.1 )
(BLAST)

001: MASSPLTANV QGTNASLRNR DEETADKQIQ FNDQSFGGND YAPKVRKPYT ITKERERWTD EEHKKFVEAL KLYGRAWRRI EEHVGSKTAV QIRSHAQKFF
101: SKVAREATGG DGSSVEPIVI PPPRPKRKPA HPYPRKFGNE ADQTSRSVSP SERDTQSPTS VLSTVGSEAL CSLDSSSPNR SLSPVSSASP PAALTTTANA
201: PEELETLKLE LFPSERLLNR ESSIKEPTKQ SLKLFGKTVL VSDSGMSSSL TTSTYCKSPI QPLPRKLSSS KTLPIIRNSQ EELLSCWIQV PLKQEDVENR
301: CLDSGKAVQN EGSSTGSNTG SVDDTGHTEK TTEPETMLCQ WEFKPSERSA FSELRRTNSE SNSRGFGPYK KRKMVTEEEE HEIHLHL

Arabidopsis Description

RVE1Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.