Factsheet for GSMUA_Achr1P06480_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P17560_001	Banana	nucleus	49.07	70.33
GSMUA_Achr7P04620_001	Banana	nucleus	41.63	67.04
GSMUA_Achr5P10280_001	Banana	nucleus	40.47	63.97
KRH08856	Soybean	nucleus	41.4	59.14
VIT_16s0050g01180.t01	Wine grape	nucleus	46.05	58.75
KRH35235	Soybean	nucleus	42.56	58.65
Solyc06g036300.2.1	Tomato	nucleus, plastid	40.93	58.47
KRG91589	Soybean	nucleus	43.02	56.23
PGSC0003DMT400074344	Potato	plastid	36.74	54.67
Bra029111.1-P	Field mustard	nucleus	40.47	54.38
Bra003117.1-P	Field mustard	nucleus	38.6	54.25
CDY52837	Canola	nucleus	38.6	54.25
CDY56155	Canola	nucleus	40.47	53.87
GSMUA_Achr10P...	Banana	nucleus	10.47	53.57
AT5G52660.2	Thale cress	nucleus	40.7	52.87
CDY27841	Canola	nucleus	34.42	51.75
CDY51831	Canola	vacuole	41.16	50.86
KRH38371	Soybean	nucleus	41.63	50.71
GSMUA_Achr1P03720_001	Banana	nucleus	36.05	45.06
GSMUA_Achr1P15370_001	Banana	mitochondrion	11.4	40.16
GSMUA_Achr3P17770_001	Banana	nucleus	21.4	38.49
GSMUA_Achr8P13440_001	Banana	nucleus	17.44	19.79
GSMUA_Achr11P...	Banana	nucleus	16.74	15.06
GSMUA_AchrUn_...	Banana	nucleus	15.35	14.13
GSMUA_AchrUn_...	Banana	nucleus	16.74	11.98
GSMUA_Achr1P06360_001	Banana	nucleus	17.44	10.33
GSMUA_Achr10P...	Banana	nucleus	8.6	6.13

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSMUA_Achr1G06480_001	EnsemblPlants:GSMUA_Achr1P06480_001	EnsemblPlants:GSMUA_Achr1T06480_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0RXK6
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF83
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00029484DC	SEG:seg

Description

myb-like DNA-binding domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G06480_001]

Coordinates

chr1:+:5170263..5178011

Molecular Weight (calculated)

47339.6 Da

IEP (calculated)

9.541

GRAVY (calculated)

-0.377

Length

430 amino acids

Sequence
(BLAST)

001: MIAAPLHCQQ TSDSIRIALP LVHPHRQPVH RHRPSPCTSP ISSHRHSRSR RPPYLLSRRL PRSLFLFMVF VHAKAIRGSR EASPKSAAFL PPDLPSPSMA
101: LPGAAGPLAA SSAPAAAAAE DPSKKIRKPY TITKSRESWT EQEHDKFLEA LHLFDRDWKK IEAFVGSKTV IQIRSHAQKY FLKIQKNGAS EHVPPPRPKR
201: KAAHPYPQKA PKYALQISQG TTPHQASCLL EPHSAFGIDT SSMSRNSNTN EAVPSGLNSS LHPVSASHLT SDDMGHAGNL VVKNCCSSST ISPVTWPTCE
301: MADHENHVTA LRVMPDFAQV YSFLGSVFDP STTGHLQKLK EMDPIDVETV LLLMGNLSIN LTSPDFEAHR KLLASFSGGT EDLDSGIANN LTCETVAPLC
401: KFMSLKLLAI NHIEFHYNQP TSHLKFQGER

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.