Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029394 | Potato | nucleus | 9.32 | 82.35 |
| GSMUA_Achr10P... | Banana | nucleus | 10.82 | 77.38 |
| GSMUA_Achr1P06360_001 | Banana | nucleus | 40.27 | 33.33 |
| GSMUA_Achr10P... | Banana | nucleus | 31.95 | 31.79 |
| GSMUA_Achr8P13440_001 | Banana | nucleus | 19.63 | 31.13 |
| GSMUA_Achr11P... | Banana | nucleus | 19.97 | 25.1 |
| GSMUA_Achr5P10280_001 | Banana | nucleus | 11.15 | 24.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.8 | 24.2 |
| GSMUA_Achr7P17560_001 | Banana | nucleus | 11.98 | 24.0 |
| GSMUA_Achr7P04620_001 | Banana | nucleus | 10.65 | 23.97 |
| GSMUA_Achr1P03720_001 | Banana | nucleus | 12.15 | 21.22 |
| GSMUA_Achr3P17770_001 | Banana | nucleus | 7.32 | 18.41 |
| GSMUA_Achr1P06480_001 | Banana | plastid | 11.98 | 16.74 |
| GSMUA_Achr1P15370_001 | Banana | mitochondrion | 2.66 | 13.11 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | MapMan:27.1.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSMUA_AchrUn_randomG03000_001 | EnsemblPlants:GSMUA_AchrUn_randomP03000_001 | EnsemblPlants:GSMUA_AchrUn_randomT03000_001 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M0U5W2 |
| InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR12802 | PANTHER:PTHR12802:SF43 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI00029489B3 | SEG:seg |
Description
Putative Protein CCA1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03000_001]
Coordinates
chrchrUn_random:-:14521595..14526232
Molecular Weight (calculated)
66712.1 Da
IEP (calculated)
6.735
GRAVY (calculated)
-0.690
Length
601 amino acids
Sequence
(BLAST)
(BLAST)
001: MRYFLDQVER LVGYMEGGWM IHVADFKSKC PRLLSTPPFS ASEVSDLEME EKSCGENMVA KVRKPYTITK QREKWTEEEH NRFLEALKLY GRSWQRIEEH
101: IGTKTAVQIR SHAQKFFTKL EKEALIKGVS PGQVHDIDIP PPRPKRKPSN PYPRKMSTGV PSPSPSAEAT DDKPPTPSSL QPTNQHSFRL ESDAATERLA
201: AMETVAAKEN FEDGNRSEVI DINQDVPSAS FFTEFIPTSE ASKKEKITVD KSLLLSEVNE EAVRGHLQHQ LPWFSPLTQC QSNQDACDSF LNISSTFSTL
301: IISTLLQNPS VHAAACLAAS VWPSPEVDTS LHSSPPVHMK PSPTMTPVVA ATVGAATAWW AAQGALPWFP HFTFAFTSAP PTRAQPVEMV QEPERRHDAS
401: FQVKASEINN SPPLLAGGVN DLRSKRKQHL SCGSNDTANN ETVDKEAEEA FTNTSAPEIN HRRLRSSAST DEPWKESEKL AYEAPLKRDL PRSSSPLHAK
501: DAQTKVRSDR DSSMLPANLS ENAGLETDLL HPHCLKKEEM SKEINGSTGQ SSVTNDFRHG NSMSSRTGFK PYKRCSVEAK ESKAVSGEET GNKKIRLPEE
601: A
101: IGTKTAVQIR SHAQKFFTKL EKEALIKGVS PGQVHDIDIP PPRPKRKPSN PYPRKMSTGV PSPSPSAEAT DDKPPTPSSL QPTNQHSFRL ESDAATERLA
201: AMETVAAKEN FEDGNRSEVI DINQDVPSAS FFTEFIPTSE ASKKEKITVD KSLLLSEVNE EAVRGHLQHQ LPWFSPLTQC QSNQDACDSF LNISSTFSTL
301: IISTLLQNPS VHAAACLAAS VWPSPEVDTS LHSSPPVHMK PSPTMTPVVA ATVGAATAWW AAQGALPWFP HFTFAFTSAP PTRAQPVEMV QEPERRHDAS
401: FQVKASEINN SPPLLAGGVN DLRSKRKQHL SCGSNDTANN ETVDKEAEEA FTNTSAPEIN HRRLRSSAST DEPWKESEKL AYEAPLKRDL PRSSSPLHAK
501: DAQTKVRSDR DSSMLPANLS ENAGLETDLL HPHCLKKEEM SKEINGSTGQ SSVTNDFRHG NSMSSRTGFK PYKRCSVEAK ESKAVSGEET GNKKIRLPEE
601: A
001: MDTNTSGEEL LAKARKPYTI TKQRERWTED EHERFLEALR LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFT KLEKEAEVKG IPVCQALDIE IPPPRPKRKP
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
101: NTPYPRKPGN NGTSSSQVSS AKDAKLVSSA SSSQLNQAFL DLEKMPFSEK TSTGKENQDE NCSGVSTVNK YPLPTKVSGD IETSKTSTVD NAVQDVPKKN
201: KDKDGNDGTT VHSMQNYPWH FHADIVNGNI AKCPQNHPSG MVSQDFMFHP MREETHGHAN LQATTASATT TASHQAFPAC HSQDDYRSFL QISSTFSNLI
301: MSTLLQNPAA HAAATFAASV WPYASVGNSG DSSTPMSSSP PSITAIAAAT VAAATAWWAS HGLLPVCAPA PITCVPFSTV AVPTPAMTEM DTVENTQPFE
401: KQNTALQDQN LASKSPASSS DDSDETGVTK LNADSKTNDD KIEEVVVTAA VHDSNTAQKK NLVDRSSCGS NTPSGSDAET DALDKMEKDK EDVKETDENQ
501: PDVIELNNRK IKMRDNNSNN NATTDSWKEV SEEGRIAFQA LFARERLPQS FSPPQVAENV NRKQSDTSMP LAPNFKSQDS CAADQEGVVM IGVGTCKSLK
601: TRQTGFKPYK RCSMEVKESQ VGNINNQSDE KVCKRLRLEG EAST
Arabidopsis Description
LHYLHY1 [Source:UniProtKB/TrEMBL;Acc:A0A178W761]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.