Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
endoplasmic reticulum: 27224218 endoplasmic reticulum: 28499913 nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28388 | Soybean | cytosol | 99.7 | 99.7 |
| GSMUA_Achr6P16850_001 | Banana | cytosol | 96.7 | 96.7 |
| GSMUA_Achr10P... | Banana | cytosol | 95.2 | 95.2 |
| PGSC0003DMT400064191 | Potato | cytosol | 95.2 | 95.2 |
| Solyc03g044140.2.1 | Tomato | cytosol, nucleus | 95.2 | 95.2 |
| GSMUA_Achr5P01690_001 | Banana | cytosol | 94.89 | 94.89 |
| Solyc02g092640.2.1 | Tomato | cytosol, nucleus | 94.89 | 94.89 |
| Os07t0114400-01 | Rice | plasma membrane | 94.89 | 94.89 |
| EER97857 | Sorghum | cytosol | 94.59 | 94.88 |
| CDY30613 | Canola | cytosol | 93.99 | 93.99 |
| CDY57359 | Canola | cytosol | 93.69 | 93.98 |
| HORVU2Hr1G063420.1 | Barley | cytosol | 93.69 | 93.69 |
| TraesCS2D01G260500.1 | Wheat | cytosol | 93.69 | 93.69 |
| CDX83104 | Canola | cytosol | 92.49 | 93.62 |
| Bra029986.1-P | Field mustard | cytosol | 92.49 | 93.62 |
| CDY57680 | Canola | cytosol | 93.39 | 93.39 |
| Zm00001d007951_P001 | Maize | cytosol, nucleus | 92.79 | 93.07 |
| CDY70654 | Canola | cytosol | 48.05 | 93.02 |
| AT2G23080.1 | Thale cress | cytosol | 91.29 | 91.29 |
| TraesCS2A01G263400.1 | Wheat | cytosol, nucleus | 93.69 | 91.23 |
| Os03t0207300-01 | Rice | cytosol | 88.29 | 88.55 |
| TraesCS4A01G049900.1 | Wheat | cytosol | 86.49 | 86.75 |
| TraesCS4D01G254600.1 | Wheat | cytosol | 86.49 | 86.75 |
| TraesCS4B01G254800.1 | Wheat | cytosol | 85.59 | 86.63 |
| HORVU4Hr1G069390.1 | Barley | cytosol | 86.19 | 86.45 |
| KRH04471 | Soybean | nucleus | 98.8 | 82.66 |
| KRH04448 | Soybean | nucleus | 85.29 | 81.84 |
| EER90840 | Sorghum | plastid | 94.59 | 81.82 |
| Zm00001d034125_P002 | Maize | mitochondrion, plastid | 93.99 | 81.3 |
| Zm00001d013217_P001 | Maize | cytosol | 93.39 | 81.2 |
| TraesCS5D01G410000.1 | Wheat | plastid | 92.49 | 80.84 |
| TraesCS5A01G400100.1 | Wheat | cytosol, mitochondrion | 92.49 | 80.84 |
| HORVU5Hr1G097230.1 | Barley | cytosol, plastid | 92.49 | 80.63 |
| TraesCS5B01G404900.1 | Wheat | cytosol, mitochondrion | 92.19 | 80.58 |
| Bra036044.1-P | Field mustard | plasma membrane | 93.99 | 80.46 |
| KRH58068 | Soybean | mitochondrion | 98.8 | 80.05 |
| VIT_07s0129g00410.t01 | Wine grape | golgi, plasma membrane | 97.3 | 80.0 |
| Bra036806.1-P | Field mustard | cytosol | 80.48 | 79.53 |
| CDX98044 | Canola | cytosol | 38.14 | 79.38 |
| Zm00001d018669_P004 | Maize | cytosol | 89.49 | 79.26 |
| TraesCS2B01G278700.2 | Wheat | cytosol | 87.99 | 77.51 |
| AT3G50000.1 | Thale cress | golgi, plasma membrane, vacuole | 93.69 | 77.42 |
| AT5G67380.1 | Thale cress | golgi, plasma membrane | 93.69 | 76.28 |
| Bra031829.1-P | Field mustard | cytosol | 60.96 | 74.09 |
| KRH58076 | Soybean | endoplasmic reticulum | 81.08 | 68.88 |
| KRH58078 | Soybean | cytosol | 3.9 | 68.42 |
| CDY71648 | Canola | plastid | 32.13 | 66.46 |
| CDY67469 | Canola | vacuole | 57.66 | 65.53 |
| CDY15289 | Canola | vacuole | 51.95 | 62.68 |
| CDY29766 | Canola | golgi, plasma membrane | 65.77 | 61.86 |
| Os03t0762000-01 | Rice | plastid | 24.62 | 56.55 |
| CDY25489 | Canola | golgi, plasma membrane | 58.26 | 39.92 |
| KRH62838 | Soybean | cytosol, mitochondrion | 8.71 | 35.37 |
| KRH11042 | Soybean | cytosol | 30.03 | 26.32 |
| KRH21245 | Soybean | cytosol | 29.43 | 26.2 |
| KRH61707 | Soybean | cytosol | 29.73 | 26.05 |
| KRH52380 | Soybean | cytosol | 29.73 | 26.05 |
| KRH31752 | Soybean | cytosol | 31.23 | 25.43 |
| KRH22265 | Soybean | cytosol | 31.83 | 25.42 |
| KRG96686 | Soybean | cytosol | 30.93 | 25.37 |
| KRH33767 | Soybean | cytosol | 31.23 | 25.37 |
| KRH27067 | Soybean | cytosol | 30.93 | 25.18 |
| KRH68409 | Soybean | cytosol | 30.63 | 25.12 |
| KRH06055 | Soybean | cytosol | 30.93 | 24.52 |
| KRH25797 | Soybean | cytosol | 30.93 | 24.52 |
| KRH26299 | Soybean | cytosol | 30.93 | 24.52 |
| KRG90477 | Soybean | cytosol | 31.23 | 24.41 |
| KRH55721 | Soybean | cytosol | 30.33 | 24.11 |
| KRH42881 | Soybean | cytosol | 27.33 | 23.76 |
| KRH58985 | Soybean | cytosol | 27.03 | 23.5 |
| KRH69166 | Soybean | cytosol | 31.53 | 23.28 |
| KRH48234 | Soybean | cytosol, mitochondrion | 31.83 | 22.55 |
| KRH65140 | Soybean | mitochondrion | 31.23 | 22.13 |
| KRH75231 | Soybean | cytosol | 6.61 | 22.0 |
| KRH40543 | Soybean | mitochondrion | 29.13 | 21.09 |
| KRH00638 | Soybean | mitochondrion | 28.83 | 20.56 |
| KRH21176 | Soybean | cytosol | 15.92 | 20.38 |
| KRH12527 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 11.11 | 16.3 |
| KRH70115 | Soybean | cytosol | 16.52 | 15.85 |
| KRH32741 | Soybean | mitochondrion | 9.01 | 13.22 |
Protein Annotations
| Gene3D:1.10.510.10 | EntrezGene:100813528 | MapMan:18.4.3.9.1 | Gene3D:3.30.200.20 | EMBL:ACUP02000657 | EnsemblPlantsGene:GLYMA_01G192100 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0004674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016301 | GO:GO:0016740 | GO:GO:0019538 | UniProt:I1J9C8 | InterPro:IPR000719 | EnsemblPlants:KRH77093 |
| ProteinID:KRH77093 | ProteinID:KRH77093.1 | InterPro:Kinase-like_dom_sf | PFAM:PF00069 | ScanProsite:PS00107 | ScanProsite:PS00108 |
| PFscan:PS50011 | PANTHER:PTHR24054 | PANTHER:PTHR24054:SF33 | InterPro:Prot_kinase_dom | InterPro:Protein_kinase_ATP_BS | SMART:SM00220 |
| SUPFAM:SSF56112 | InterPro:Ser/Thr_kinase_AS | UniParc:UPI00023370DC | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr1:-:52646187..52651971
Molecular Weight (calculated)
39239.1 Da
IEP (calculated)
8.274
GRAVY (calculated)
-0.528
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKARVYTDV NVLRPKEYSD YESLTLQWGD QDDYEVVRKV GRGKYSEVFE GINVNSNERC IIKILKPVKK KKIKREIKIL QNICGGPNIV KLLDIVRDQH
101: SKTPSLIFEY VNSTDFKVLY PTLTDYDIRY YIYELLKALD YCHSQGIMHR DVKPHNVMID HELRKLRLID WGLAEFYHPG KEYNVRVASR YFKGPELLVD
201: LQDYDYSLDM WSLGCMFAGM IFRKEPFFYG HDNHDQLVKI AKVLGTDELN AYLNKYHLEL DPQLDALVGR HSRKPWSKFI NADNQHLVSP EAIDFLDKLL
301: RYDHQDRLTA REAMAHPYFS QVRAAESSRM RTQ
101: SKTPSLIFEY VNSTDFKVLY PTLTDYDIRY YIYELLKALD YCHSQGIMHR DVKPHNVMID HELRKLRLID WGLAEFYHPG KEYNVRVASR YFKGPELLVD
201: LQDYDYSLDM WSLGCMFAGM IFRKEPFFYG HDNHDQLVKI AKVLGTDELN AYLNKYHLEL DPQLDALVGR HSRKPWSKFI NADNQHLVSP EAIDFLDKLL
301: RYDHQDRLTA REAMAHPYFS QVRAAESSRM RTQ
001: MIDTLFFLFF LFFDSPLRRL LLLCAVLALR APTAHSPILR SSIVTPTARA VSEVSGCTTI DPDFLVEISD SNQTRAMSKA RVYTEVNVIR PKDYWDYESL
101: IVQWGEQDDY EVVRKVGRGK YSEVFEGINV NSKEKCIIKI LKPVKKKKIR REIKILQNLC GGPNIVKLLD VVRDQHSKTP SLIFEYVNST DFKVLYPTLT
201: DYDIRYYIYE LLKALDFCHS QGIMHRDVKP HNVMIDHELR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLQDY DYSLDMWSLG CMFAGMIFRK
301: EPFFYGHDNQ DQLVKIAKVL GTDELNAYLN KYQLELDPQL EALVGRHSRK PWSKFINADN QHLVSPEAID FLDKLLRYDH QDRLTAKEAM AHAYFAQVRA
401: AETSRMRSQ
101: IVQWGEQDDY EVVRKVGRGK YSEVFEGINV NSKEKCIIKI LKPVKKKKIR REIKILQNLC GGPNIVKLLD VVRDQHSKTP SLIFEYVNST DFKVLYPTLT
201: DYDIRYYIYE LLKALDFCHS QGIMHRDVKP HNVMIDHELR KLRLIDWGLA EFYHPGKEYN VRVASRYFKG PELLVDLQDY DYSLDMWSLG CMFAGMIFRK
301: EPFFYGHDNQ DQLVKIAKVL GTDELNAYLN KYQLELDPQL EALVGRHSRK PWSKFINADN QHLVSPEAID FLDKLLRYDH QDRLTAKEAM AHAYFAQVRA
401: AETSRMRSQ
Arabidopsis Description
CKA1Casein kinase II subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q08467]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.