Factsheet for Os01t0156000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044969_P001	Maize	cytosol	20.91	68.09
Zm00001d015487_P001	Maize	nucleus	16.99	66.67
TraesCS3D01G134000.1	Wheat	nucleus	64.71	66.44
Zm00001d023295_P001	Maize	nucleus	20.59	66.32
TraesCS3A01G308500.1	Wheat	nucleus	64.38	66.11
Zm00001d039785_P001	Maize	nucleus	60.46	65.84
TraesCS3B01G151500.1	Wheat	nucleus	61.11	65.38
Zm00001d032105_P001	Maize	plastid	25.16	60.63
Zm00001d012051_P001	Maize	plastid	25.82	58.09
OQU86282	Sorghum	nucleus	67.65	53.49
Os05t0162800-00	Rice	mitochondrion, nucleus	33.01	49.03
Zm00001d011020_P001	Maize	extracellular	32.03	48.28
HORVU3Hr1G025030.1	Barley	nucleus	65.36	46.62
GSMUA_Achr3P17770_001	Banana	nucleus	29.09	37.24
Os02t0680700-01	Rice	nucleus	33.33	35.05
Os06t0669700-01	Rice	nucleus	27.12	33.6
Os06t0105800-02	Rice	nucleus	31.37	32.21
Os06t0728700-01	Rice	nucleus	21.57	14.63
Os04t0583900-01	Rice	nucleus	20.59	13.61
Os02t0685200-01	Rice	nucleus	21.57	13.44
Os08t0157600-01	Rice	nucleus	23.53	10.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	MapMan:27.1.6.2	EntrezGene:4324082	EMBL:AK106969	ProteinID:BAF03982.1
ProteinID:BAS70482.1	ProteinID:EEE53900.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	EnsemblPlantsGene:Os01g0156000	EnsemblPlants:Os01t0156000-01	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR12802	PANTHER:PTHR12802:SF85	UniProt:Q0JQJ6	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0000DD8984	RefSeq:XP_015646001.1	SEG:seg	:

Description

Similar to Myb family DNA-binding protein. (Os01t0156000-01)

Coordinates

chr1:-:3003860..3005728

Molecular Weight (calculated)

34112.4 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.498

Length

306 amino acids

Sequence
(BLAST)

001: MDRNTNNNSN SSSSSEMPGK KARKPYTITK PRERWSEEEH ERFLDALIMY GRDWKKIEEH VGTKTTIQIR SHAQKYFLKV QKMGLAAGLP PQYPRRRLVM
101: QQQQQQSSPA VSSSVAATAI LHGQPQCLPP HHNVAVQSSI GWECPGVLPP ATNDMQNLEW ASTSGTAAWG NHHGLIEPPA AFVSFPGESS FMGAASFSNT
201: SMDWTGTTSE MATASIVQDE TIELPLSPDD LQFAQVYRFI GDIFDPDSPC PVETHLQKLK SMDDIIVKTI LLVLRNLEDN LLSPQFEPIR RLLSTYDPNR
301: GLSGHL

Best Arabidopsis Sequence Match ( AT5G52660.2 )
(BLAST)

001: MVSRNSDGYF LDPTGMTVPG LGPSFTAAVS SSSSPTTSST AVAVADVTAM VSSSEEDLSK KIRKPYTITK SRESWTEPEH DKFLEALQLF DRDWKKIEAF
101: IGSKTVIQIR SHAQKYFLKV QKSGTGEHLP PPRPKRKAAH PYPQKAHKNV QLQVPGSFKS TSEPNDPSFM FRPESSSMLM TSPTTAAAAP WTNNAQTISF
201: TPLPKAGAGA NNNCSSSSEN TPRPRSNRDA RDHGNVGHSL RVLPDFAQVY GFIGSVFDPY ASNHLQKLKK MDPIDVETVL LLMRNLSINL SSPDFEDHRR
301: LLSSYDIGSE TATDHGGVNK TLNKDPPEIS T

Arabidopsis Description

RVE6Protein REVEILLE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.