CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78786	Canola	cytosol	89.44	90.71
CDX90462	Canola	cytosol	78.87	78.6
CDY09612	Canola	cytosol	78.87	78.6
CDY40582	Canola	cytosol	72.89	75.0
CDY28980	Canola	cytosol	72.89	74.73
TraesCS2D01G242000.2	Wheat	cytosol	67.96	71.75
TraesCS2A01G245100.1	Wheat	cytosol	67.96	71.22
CDY41181	Canola	cytosol	65.85	71.1
CDX71824	Canola	cytosol	65.49	70.72
Zm00001d021557_P001	Maize	cytosol	67.96	70.7
CDY64765	Canola	cytosol	66.2	70.41
KXG36270	Sorghum	cytosol	67.61	69.82
CDX77739	Canola	cytosol	60.92	69.48
CDX95610	Canola	cytosol	67.25	69.45
CDX83421	Canola	cytosol	67.25	69.45
EER91910	Sorghum	cytosol	63.73	69.08
CDY48249	Canola	cytosol	63.03	66.79
CDX74677	Canola	cytosol	62.68	66.67
Os10t0564900-01	Rice	cytosol	65.49	66.67
Os07t0495100-01	Rice	cytosol	67.61	66.67
TraesCSU01G007300.1	Wheat	cytosol	64.44	66.55
TraesCS1A01G215700.1	Wheat	cytosol	64.44	66.55
TraesCS1B01G229200.1	Wheat	cytosol	64.44	66.55
HORVU1Hr1G055250.1	Barley	cytosol	64.44	66.55
Zm00001d029978_P001	Maize	cytosol	51.06	65.91
TraesCS2D01G388200.1	Wheat	cytosol	63.73	65.34
TraesCS2B01G408900.1	Wheat	cytosol	63.73	65.34
TraesCS2A01G390500.1	Wheat	cytosol	63.73	65.34
HORVU2Hr1G092930.1	Barley	cytosol	63.73	65.34
CDY64781	Canola	cytosol	59.15	63.16
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	55.99	62.85
OQU82060	Sorghum	cytosol	61.27	62.59
Zm00001d006440_P003	Maize	cytosol	66.2	62.25
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	55.63	62.2
CDY48948	Canola	cytosol	58.45	61.25
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	46.83	61.01
Zm00001d002778_P001	Maize	nucleus	50.7	60.0
HORVU4Hr1G090280.3	Barley	cytosol	55.28	57.93
Zm00001d000052_P004	Maize	cytosol	49.3	48.44

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	GO:A0A078HM19	UniProt:A0A078HM19	EnsemblPlants:CDY38414
ProteinID:CDY38414	ProteinID:CDY38414.1	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859
EnsemblPlantsGene:GSBRNA2T00065846001	InterPro:IPR016149	PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740
PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	UniParc:UPI0004EDCBAA	SEG:seg	:

Description

BnaC01g10230DCasein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078HM19]

Coordinates

chrLK032423:+:253551..255435

Molecular Weight (calculated)

32090.4 Da

IEP (calculated)

6.174

GRAVY (calculated)

-0.626

Length

284 amino acids

Sequence
(BLAST)

001: MYKERGTRGS KSEVVLVDQK RVNKVHDNRA SHSMSHTVNG KGKAAASNSV TIGKQLHDHN GRDSRPASLS KPTISDDVSD TDSEESEVSG SEGEDTSWVS
101: WFCNLRGNEF FCEVDDDYIQ DDFNLCGLNH QVPYYDYALD LILDVDFSQG ERFTDEQNEL VESAAEMLYG MIHARYILTS KGLASMLDKY KNYDFGRCPR
201: VYCCGQPCLP VGQSDIPRSS TVKIYCPKCE DVYYPRSKYQ GNIDGAYFGT TFPHLFLMTY GHLKPQKAAQ SYVPRVFGFK LHKP

Best Arabidopsis Sequence Match ( AT4G17640.1 )
(BLAST)

001: MYRERGMVGS KSEVVDRKRI NEIHDNRPSH SMSQPVNGKG KVTSTSVLMG KQQLHDKESS RSGSISKTNI SDAVDISDTD SEESEVSGSD GEDTSWISWF
101: CNLRGNEFFC EVDDDYIQDD FNLCGLSHQV PYYDYALDLI LDVESSHGEM FTEEQNELIE SAAEMLYGMI HARFILTSKG LASMLDKYKN YDFGRCPRVY
201: CCGQPCLPVG QSDIPRASTV KIYCPKCEDV YYPRSKYQGN IDGAYFGTTF PHLFLMTYGH LKPQKASQSY TQRVFGFKLH KP

Arabidopsis Description

CKB2Casein kinase II subunit beta-2 [Source:UniProtKB/Swiss-Prot;Acc:P40229]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.