Factsheet for VIT_15s0021g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029978_P001	Maize	cytosol	54.9	76.36
VIT_02s0012g00080.t01	Wine grape	cytosol	63.07	72.56
Zm00001d002778_P001	Maize	nucleus	55.23	70.42
Zm00001d021557_P001	Maize	cytosol	62.42	69.96
TraesCS2D01G242000.2	Wheat	cytosol	61.44	69.89
TraesCS2A01G245100.1	Wheat	cytosol	61.11	69.0
KXG36270	Sorghum	cytosol	61.76	68.73
Os07t0495100-01	Rice	cytosol	63.07	67.01
EER91910	Sorghum	cytosol	56.54	66.03
Solyc10g061940.1.1	Tomato	mitochondrion	25.16	65.81
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	46.08	64.68
Solyc10g061930.1.1	Tomato	nucleus	34.31	63.25
TraesCSU01G007300.1	Wheat	cytosol	56.54	62.91
TraesCS1A01G215700.1	Wheat	cytosol	56.54	62.91
TraesCS1B01G229200.1	Wheat	cytosol	56.54	62.91
TraesCS2A01G390500.1	Wheat	cytosol	56.86	62.82
TraesCS2D01G388200.1	Wheat	cytosol	56.86	62.82
TraesCS2B01G408900.1	Wheat	cytosol	56.86	62.82
HORVU2Hr1G092930.1	Barley	cytosol	56.86	62.82
Os10t0564900-01	Rice	cytosol	57.19	62.72
HORVU1Hr1G055250.1	Barley	cytosol	56.21	62.55
Zm00001d006440_P003	Maize	cytosol	61.44	62.25
OQU82060	Sorghum	cytosol	56.54	62.23
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	47.39	57.31
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	47.39	57.09
Zm00001d000052_P004	Maize	cytosol	52.29	55.36
HORVU4Hr1G090280.3	Barley	cytosol	46.73	52.77

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	ProteinID:CCB43914	ProteinID:CCB43914.1	InterPro:Casein_kin_II_reg-sub_N
InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	UniProt:F6GVD1	EMBL:FN594952	GO:GO:0003674	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859	InterPro:IPR016149
PFAM:PF01214	PRINTS:PR00472	ScanProsite:PS01101	PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085
SUPFAM:SSF57798	TIGR:TC59589	UniParc:UPI000210A602	ArrayExpress:VIT_15s0021g01020	EnsemblPlantsGene:VIT_15s0021g01020	EnsemblPlants:VIT_15s0021g01020.t01
SEG:seg	:	:	:	:	:

Description

Casein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:F6GVD1]

Coordinates

chr15:-:11003550..11012476

Molecular Weight (calculated)

34113.9 Da

IEP (calculated)

4.463

GRAVY (calculated)

-0.503

Length

306 amino acids

Sequence
(BLAST)

001: MYRERGGGSS KSEIVGGPLD RKRINDALDK HLEKSSPSTS KGLSSKDKER LSVPSTSAGK SQLDHRDTRA ASLPKNKCSD EESETDSEES DVSGSDGDDT
101: SWISWFCNLR GNEFFCEVDD EYIQDDFNLC GLSSQVPYYD YALDLILDVE SSHGDMFTEE QNELVESAAE MLYGLIHVRY ILTSKGMSAM LEKYKSYDFG
201: RCPRVYCCGQ PCLPVGQSDI PRSSTVKIYC PKCEDIYYPR SKYQGTTEGS AELRPKSIWL QDPQAMMLEL YDAFCVEISH SLSISGGPLL PAAEIQVVLT
301: LLVKVQ

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.