Factsheet for Solyc10g061930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050680.2.1	Tomato	nucleus	60.24	35.09
Zm00001d002778_P001	Maize	nucleus	50.6	35.0
Solyc01g088740.2.1	Tomato	cytosol	60.24	34.97
VIT_15s0021g01020.t01	Wine grape	cytosol	63.25	34.31
TraesCS2D01G242000.2	Wheat	cytosol	54.22	33.46
TraesCS2A01G245100.1	Wheat	cytosol	54.22	33.21
Zm00001d029978_P001	Maize	cytosol	43.98	33.18
Zm00001d021557_P001	Maize	cytosol	54.22	32.97
KXG36270	Sorghum	cytosol	53.61	32.36
Solyc06g061000.2.1	Tomato	cytosol	54.22	31.47
Os07t0495100-01	Rice	cytosol	54.22	31.25
TraesCS2D01G388200.1	Wheat	cytosol	50.6	30.32
HORVU2Hr1G092930.1	Barley	cytosol	50.6	30.32
TraesCS2B01G408900.1	Wheat	cytosol	50.6	30.32
TraesCS2A01G390500.1	Wheat	cytosol	50.6	30.32
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	39.76	30.28
TraesCS1B01G229200.1	Wheat	cytosol	48.8	29.45
TraesCS1A01G215700.1	Wheat	cytosol	48.8	29.45
TraesCSU01G007300.1	Wheat	cytosol	48.8	29.45
HORVU1Hr1G055250.1	Barley	cytosol	48.8	29.45
Os10t0564900-01	Rice	cytosol	49.4	29.39
Zm00001d006440_P003	Maize	cytosol	53.01	29.14
OQU82060	Sorghum	cytosol	48.8	29.14
EER91910	Sorghum	cytosol	44.58	28.24
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	39.16	25.69
Zm00001d000052_P004	Maize	cytosol	44.58	25.61
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	38.55	25.2
HORVU4Hr1G090280.3	Barley	cytosol	38.55	23.62
Solyc10g061940.1.1	Tomato	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.10.1820.10	MapMan:18.4.3.9.2	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	GO:GO:0003674
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234	GO:GO:0045859
InterPro:IPR016149	UniProt:K4D1I3	PFAM:PF01214	PRINTS:PR00472	PANTHER:PTHR11740	PANTHER:PTHR11740:SF15
SMART:SM01085	SUPFAM:SSF57798	EnsemblPlantsGene:Solyc10g061930.1	EnsemblPlants:Solyc10g061930.1.1	UniParc:UPI0002769754	SEG:seg

Description

Casein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:K4D1I3]

Coordinates

chr10:+:23433196..23435818

Molecular Weight (calculated)

18500.8 Da

IEP (calculated)

4.357

GRAVY (calculated)

-0.899

Length

166 amino acids

Sequence
(BLAST)

001: MYRDRGGGGS SKSEMVGGKR INDALDKQLD KSLASTSRAL KDKTVPSTST VTGKLHQRHP NHHMDHQRDT LSSSTPTTKN KCSDEESESD SEESDVSGSD
101: GDDTSWISWF CNLRGNEFFC EVDDDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSHGFS CYTQFD

Best Arabidopsis Sequence Match ( AT2G44680.3 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGS ILCSSVQKSF ILS

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.