Factsheet for VIT_02s0012g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0048g02410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G60250.1	VIT_15s0048g02410.t01	AT2G46830.1	10535927
AT3G60250.1	VIT_15s0048g02410.t01	AT2G46830.1	14978263
AT3G60250.1	VIT_15s0048g02410.t01	AT2G46830.1	9724822

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G242000.2	Wheat	cytosol	78.2	77.32
TraesCS2A01G245100.1	Wheat	cytosol	78.2	76.75
Zm00001d021557_P001	Maize	cytosol	78.57	76.56
CDY41181	Canola	cytosol	74.81	75.67
Bra007520.1-P	Field mustard	cytosol	74.81	75.67
KXG36270	Sorghum	cytosol	78.2	75.64
CDY64765	Canola	cytosol	75.19	74.91
CDX71824	Canola	cytosol	73.68	74.52
Bra003407.1-P	Field mustard	cytosol	74.44	74.16
EER91910	Sorghum	cytosol	72.56	73.66
PGSC0003DMT400068359	Potato	cytosol	77.82	72.63
Solyc06g061000.2.1	Tomato	cytosol	77.82	72.38
TraesCS1B01G229200.1	Wheat	cytosol	74.44	72.0
TraesCS1A01G215700.1	Wheat	cytosol	74.44	72.0
TraesCSU01G007300.1	Wheat	cytosol	74.44	72.0
Os07t0495100-01	Rice	cytosol	77.82	71.88
Zm00001d029978_P001	Maize	cytosol	59.4	71.82
AT3G60250.1	Thale cress	cytosol	74.44	71.74
Bra000359.1-P	Field mustard	cytosol	74.06	71.64
HORVU1Hr1G055250.1	Barley	cytosol	74.06	71.64
CDX83421	Canola	cytosol	74.06	71.64
Os10t0564900-01	Rice	cytosol	74.81	71.33
CDX95610	Canola	cytosol	73.31	70.91
Bra004856.1-P	Field mustard	cytosol	69.55	70.61
CDX74677	Canola	cytosol	70.68	70.41
AT2G44680.1	Thale cress	cytosol	74.81	70.32
CDY48249	Canola	cytosol	70.68	70.15
TraesCS2A01G390500.1	Wheat	cytosol	71.43	68.59
TraesCS2B01G408900.1	Wheat	cytosol	71.43	68.59
TraesCS2D01G388200.1	Wheat	cytosol	71.43	68.59
HORVU2Hr1G092930.1	Barley	cytosol	71.43	68.59
Zm00001d006440_P003	Maize	cytosol	77.07	67.88
OQU82060	Sorghum	cytosol	69.55	66.55
TraesCSU01G129600.1	Wheat	cytosol, mitochondrion	62.41	65.61
TraesCS5A01G545600.3	Wheat	cytosol, mitochondrion	62.03	64.96
TraesCS4B01G379300.1	Wheat	cytosol, mitochondrion	53.01	64.68
Zm00001d002778_P001	Maize	nucleus	57.89	64.17
VIT_15s0021g01020.t01	Wine grape	cytosol	72.56	63.07
HORVU4Hr1G090280.3	Barley	cytosol	61.28	60.15
GSMUA_Achr4P17850_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	48.5	55.13
Zm00001d000052_P004	Maize	cytosol	57.52	52.94

Protein Annotations

Gene3D:1.10.1820.10	EntrezGene:100262569	wikigene:100262569	MapMan:18.4.3.9.2	Gene3D:2.20.25.20	ProteinID:CBI33984
ProteinID:CBI33984.3	InterPro:Casein_kin_II_reg-sub_N	InterPro:Casein_kinase_II_beta_like	InterPro:Casein_kinase_II_reg-sub	UniProt:D7TTK4	EMBL:FN596247
GO:GO:0003674	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005956	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019538	GO:GO:0019887	GO:GO:0030234
GO:GO:0045859	InterPro:IPR016149	EntrezGene:LOC100262569	wikigene:LOC100262569	PFAM:PF01214	PRINTS:PR00472
PANTHER:PTHR11740	PANTHER:PTHR11740:SF15	SMART:SM01085	SUPFAM:SSF57798	TIGR:TC52102	TIGR:TC53606
UniParc:UPI0001BE45D6	ArrayExpress:VIT_02s0012g00080	EnsemblPlantsGene:VIT_02s0012g00080	EnsemblPlants:VIT_02s0012g00080.t01	unigene:Vvi.24892	RefSeq:XP_002279768
RefSeq:XP_002279768.2	RefSeq:XP_003631465	RefSeq:XP_003631465.1	RefSeq:XP_003631466	RefSeq:XP_003631466.1	RefSeq:XP_010664237.1
SEG:seg	:	:	:	:	:

Description

Casein kinase II subunit beta [Source:UniProtKB/TrEMBL;Acc:D7TTK4]

Coordinates

chr2:+:5692658..5701126

Molecular Weight (calculated)

29875.8 Da

IEP (calculated)

4.694

GRAVY (calculated)

-0.497

Length

266 amino acids

Sequence
(BLAST)

001: MYRERGVAAA GSKAEMASID RKRINDALDK HLERSSPSTS KGLNGKDKDR VSAQSTLIEE SETDTEESDV SGSDGDDASW ISWFCHMRGH EFFCEVDDDY
101: IQDDFNLCGL SSQVPYYDYA LDLILDVESS HGDSFTEEQN ELVESAAEML YGLIHVRYIL TSKGLAAMLD KYKDCDFGRC PRVYCCGQAC LPVGLSDIPR
201: SSTVNVYCPK CEDIYYPRSK SQGDIDGAYF GTTFPHLFLM TYGHLKPQKA SQSYVPRVFG FKMHKP

Best Arabidopsis Sequence Match ( AT2G44680.1 )
(BLAST)

001: MYKDRSGGGI MGGGGSSRSE ILGGAIDRKR INDALDKHLK KSSPSTSRVF TSKDKDSVPS TSTAKSQLHS RSPDVESDTD SEGSDVSGSE GDDTSWISWF
101: CNLRGNEFFC EVDEDYIQDD FNLCGLSGQV PYYDYALDLI LDVESSNGDM FTEEQHEMVE SAAEMLYGLI HVRYILTTKG MAAMMEKYKN YDFGRCPRVF
201: CCGQSCLPVG QSDIPRSSTV KIYCPKCEDI YYPRSKYQGN IDGAYFGTTF PHLFLMAYGN MKPQKPAQNY VPKIFGFKVH NKQ

Arabidopsis Description

CKB4Putative casein kinase II subunit beta-4 [Source:UniProtKB/Swiss-Prot;Acc:O80507]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.