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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY41299 Canola nucleus 80.87 84.86
Bra034074.1-P Field mustard nucleus 74.83 84.79
Bra029778.1-P Field mustard nucleus 85.91 84.21
CDY44719 Canola nucleus 85.57 83.88
CDY41598 Canola nucleus 83.56 82.72
AT5G02840.1 Thale cress nucleus 66.44 67.58
KRH32383 Soybean plastid 65.77 66.67
VIT_08s0040g03220.t01 Wine grape nucleus 61.07 64.31
PGSC0003DMT400028711 Potato nucleus 61.41 63.99
Solyc10g084370.1.1 Tomato nucleus 62.42 62.84
KRG95914 Soybean nucleus 60.07 61.94
KRH19794 Soybean nucleus 62.42 61.79
KRH67632 Soybean nucleus 61.41 61.2
AT1G01520.3 Thale cress plastid 44.3 45.99
AT5G52660.2 Thale cress nucleus 50.0 45.02
AT4G01280.2 Thale cress nucleus 44.3 43.56
AT5G37260.1 Thale cress nucleus 22.48 23.34
AT5G17300.1 Thale cress nucleus 24.16 18.6
AT3G10113.1 Thale cress nucleus 20.81 18.45
AT1G18330.2 Thale cress nucleus 21.48 17.2
AT2G46830.1 Thale cress nucleus 25.84 12.66
AT1G01060.7 Thale cress nucleus 25.5 11.78
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.2MapMan:27.1.6.2EntrezGene:820117ProteinID:AAF23291.1ProteinID:AEE74786.1
ProteinID:AEE74787.1EMBL:AJ937213ProteinID:ANM65370.1ProteinID:ANM65371.1ArrayExpress:AT3G09600EnsemblPlantsGene:AT3G09600
RefSeq:AT3G09600TAIR:AT3G09600RefSeq:AT3G09600-TAIR-GEnsemblPlants:AT3G09600.7EMBL:AY091106EMBL:AY122969
EMBL:AY550307GO:GO:0000003GO:GO:0001190GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0006366GO:GO:0006464GO:GO:0006950
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009628GO:GO:0009651
GO:GO:0009719GO:GO:0009723GO:GO:0009733GO:GO:0009737GO:GO:0009739GO:GO:0009751
GO:GO:0009753GO:GO:0009791GO:GO:0009987GO:GO:0010628GO:GO:0016043GO:GO:0019538
GO:GO:0032922GO:GO:0042752GO:GO:0042753GO:GO:0043565GO:GO:0043966GO:GO:0045944
GO:GO:0046686GO:GO:0048511GO:GO:0048573InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_dom
InterPro:Myb_dom_plantsRefSeq:NP_001030662.1RefSeq:NP_001327348.1RefSeq:NP_001327349.1RefSeq:NP_187571.2PFAM:PF00249
PFscan:PS51294PANTHER:PTHR12802PANTHER:PTHR12802:SF81UniProt:Q8RWU3InterPro:SANT/MybSMART:SM00717
SUPFAM:SSF46689TIGRFAMs:TIGR01557UniParc:UPI00000A69DASEG:seg::
Description
RVE8Protein REVEILLE 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU3]
Coordinates
chr3:+:2946295..2949014
Molecular Weight (calculated)
32802.8 Da
IEP (calculated)
9.792
GRAVY (calculated)
-0.587
Length
298 amino acids
Sequence
(BLAST)
001: MSSSPSRNPT NAEAPPPPPT STDAVAEGSS KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIED FVGSKTVIQI RSHAQKYFLK VQKNGTLAHV
101: PPPRPKRKAA HPYPQKASKN AQMPLQVSTS FTTTRNGDMP GYASWDDASM LLNRVISPQH ELATLRGAEA DIGSKGLLNV SSPSTSGMGS SSRTVSGSEI
201: VRKAKQPPVL HGVPDFAEVY NFIGSVFDPE TRGHVEKLKE MDPINFETVL LLMRNLTVNL SNPDLESTRK VLLSYDNVTT ELPSVVSLVK NSTSDKSA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.