Factsheet for Zm00001d024547_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034946_P001	Maize	mitochondrion	46.67	16.67
Zm00001d034947_P001	Maize	mitochondrion	46.67	16.67
Zm00001d034945_P001	Maize	mitochondrion, nucleus	45.0	15.79
Zm00001d015487_P001	Maize	nucleus	20.0	15.38
Zm00001d017609_P011	Maize	nucleus	56.67	12.45
Zm00001d023295_P001	Maize	nucleus	18.33	11.58
Zm00001d045581_P002	Maize	nucleus	56.67	10.76
Zm00001d046974_P002	Maize	nucleus	58.33	10.39
Zm00001d039785_P001	Maize	nucleus	48.33	10.32
Zm00001d036632_P002	Maize	nucleus	60.0	10.03
Zm00001d051480_P001	Maize	nucleus	65.0	9.87
Zm00001d014863_P002	Maize	nucleus	61.67	8.56
Zm00001d017642_P001	Maize	nucleus	61.67	7.92
Zm00001d002545_P002	Maize	nucleus	56.67	7.73
Zm00001d049543_P003	Maize	nucleus	88.33	7.36
Zm00001d026017_P001	Maize	nucleus	55.0	7.28
Zm00001d024546_P001	Maize	nucleus	10.0	0.9
Zm00001d011020_P001	Maize	extracellular	1.67	0.49
Zm00001d044969_P001	Maize	cytosol	0.0	0.0
Zm00001d032105_P001	Maize	plastid	0.0	0.0
Zm00001d012051_P001	Maize	plastid	0.0	0.0

Protein Annotations

Gene3D:1.20.58.1880	MapMan:15.5.2.2	UniProt:A0A1D6J043	ProteinID:AQK41468.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR12802	PANTHER:PTHR12802:SF43
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000844F114	EnsemblPlantsGene:Zm00001d024547	EnsemblPlants:Zm00001d024547_P001
EnsemblPlants:Zm00001d024547_T001	:	:	:	:	:

Description

MYB-related-transcription factor 48Putative MYB DNA-binding domain superfamily protein

Coordinates

chr10:-:77722777..77724235

Molecular Weight (calculated)

7163.7 Da

IEP (calculated)

10.382

GRAVY (calculated)

-0.748

Length

60 amino acids

Sequence
(BLAST)

1: MEVNSSGEET VIKVRKPYTI TKQRERWTEA EHKRFLEALK LYGRAWQRIE VMGLKSMSHV

Best Arabidopsis Sequence Match ( AT2G46830.1 )
(BLAST)

001: METNSSGEDL VIKTRKPYTI TKQRERWTEE EHNRFIEALR LYGRAWQKIE EHVATKTAVQ IRSHAQKFFS KVEKEAEAKG VAMGQALDIA IPPPRPKRKP
101: NNPYPRKTGS GTILMSKTGV NDGKESLGSE KVSHPEMANE DRQQSKPEEK TLQEDNCSDC FTHQYLSAAS SMNKSCIETS NASTFREFLP SREEGSQNNR
201: VRKESNSDLN AKSLENGNEQ GPQTYPMHIP VLVPLGSSIT SSLSHPPSEP DSHPHTVAGD YQSFPNHIMS TLLQTPALYT AATFASSFWP PDSSGGSPVP
301: GNSPPNLAAM AAATVAAASA WWAANGLLPL CAPLSSGGFT SHPPSTFGPS CDVEYTKAST LQHGSVQSRE QEHSEASKAR SSLDSEDVEN KSKPVCHEQP
401: SATPESDAKG SDGAGDRKQV DRSSCGSNTP SSSDDVEADA SERQEDGTNG EVKETNEDTN KPQTSESNAR RSRISSNITD PWKSVSDEGR IAFQALFSRE
501: VLPQSFTYRE EHREEEQQQQ EQRYPMALDL NFTAQLTPVD DQEEKRNTGF LGIGLDASKL MSRGRTGFKP YKRCSMEAKE SRILNNNPII HVEQKDPKRM
601: RLETQAST

Arabidopsis Description

CCA1Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.