Factsheet for Zm00001d028053_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89533	Sorghum	mitochondrion	100.0	100.0
Zm00001d006088_P001	Maize	cytosol	5.88	3.45
Zm00001d039730_P001	Maize	cytosol	8.4	3.13
Zm00001d016188_P002	Maize	cytosol	10.08	2.91
Zm00001d053548_P001	Maize	cytosol	9.24	2.6
Zm00001d039407_P001	Maize	cytosol	9.24	2.56
Zm00001d037010_P003	Maize	cytosol	8.4	2.48
Zm00001d008893_P001	Maize	cytosol	8.4	2.46
Zm00001d008357_P002	Maize	cytosol	8.4	2.37
Zm00001d053206_P001	Maize	cytosol	6.72	2.31
Zm00001d040263_P003	Maize	cytosol	7.56	2.21
Zm00001d048564_P003	Maize	cytosol, mitochondrion	8.4	2.13
Zm00001d029664_P001	Maize	cytosol, mitochondrion	8.4	2.11
Zm00001d007951_P001	Maize	cytosol, nucleus	5.88	2.11
Zm00001d013217_P001	Maize	cytosol	6.72	2.09
Zm00001d034125_P002	Maize	mitochondrion, plastid	6.72	2.08
Zm00001d009055_P001	Maize	cytosol	6.72	1.97
Zm00001d024729_P001	Maize	plastid	6.72	1.95
Zm00001d034137_P001	Maize	plastid	5.04	1.53
Zm00001d012869_P005	Maize	mitochondrion	9.24	1.02
Os01t0252200-01	Rice	nucleus	0.84	0.6
Zm00001d032025_P001	Maize	mitochondrion	0.84	0.51
Zm00001d018669_P004	Maize	cytosol	0.84	0.27
Zm00001d044362_P001	Maize	extracellular, golgi	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d028053_P001	EnsemblPlants:Zm00001d028053_T001	EnsemblPlantsGene:Zm00001d028053	EntrezGene:100282391	Gene3D:3.40.30.10	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	InterPro:Ribosome/NADH_DH	InterPro:Thioredoxin-like_sf
PANTHER:PTHR21396	PFAM:PF05047	ProteinID:ONL94581.1	SMART:SM00916	SUPFAM:SSF52833	UniParc:UPI0001A899B4
UniProt:A0A096PS68	MapMan:35.2	:	:	:	:

Description

Mitochondrial ribosomal protein L43

Coordinates

chr1:+:21761959..21767021

Molecular Weight (calculated)

13762.0 Da

IEP (calculated)

11.225

GRAVY (calculated)

-0.489

Length

119 amino acids

Sequence
(BLAST)

001: MALRGVWQLQ KLVVNYCDWG GSSRGIRAFM EAHLPAFKEK NPHLEVVTEL VRGQHPNLKG IYKNHNERVV CVRNLPPEEI LLQATRLRNS LGRKVVKLRT
101: RHVTKRPSVQ GTWTTELKM

Best Arabidopsis Sequence Match ( AT3G59650.1 )
(BLAST)

001: MALRGVWQLK KLVVSYCNWG GSSRGIRAFM ESELPALKEK NPQLEVITEL SRGQHPYLKG IYRNRNERVV CVKNMDPEEV LLNATRLRNS LGRKVVKLRT
101: RHVTKHPSVQ GTWTTAVKF

Arabidopsis Description

Mitochondrial ribosomal protein L51/S25/CI-B8 family protein [Source:UniProtKB/TrEMBL;Acc:F4J9E4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.