Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0205700-01 | Rice | cytosol | 21.56 | 15.45 |
| Os01t0252100-02 | Rice | cytosol, plasma membrane | 31.74 | 12.99 |
| Os05t0207500-01 | Rice | cytosol | 30.54 | 12.69 |
| Os02t0236200-01 | Rice | cytosol | 29.94 | 12.47 |
| Os01t0296100-01 | Rice | cytosol | 29.94 | 12.25 |
| Os05t0134000-03 | Rice | cytosol | 29.94 | 12.17 |
| Os06t0547900-02 | Rice | cytosol | 28.74 | 11.91 |
| Os03t0841800-01 | Rice | mitochondrion | 29.94 | 11.79 |
| Os10t0521700-01 | Rice | cytosol, mitochondrion | 32.93 | 11.73 |
| Os07t0114400-01 | Rice | plasma membrane | 16.17 | 8.11 |
| Os03t0207300-01 | Rice | cytosol | 15.57 | 7.83 |
| Os03t0763000-01 | Rice | plastid | 16.17 | 6.62 |
| Os03t0762000-01 | Rice | plastid | 3.59 | 4.14 |
| EER89533 | Sorghum | mitochondrion | 0.6 | 0.84 |
| Zm00001d028053_P001 | Maize | mitochondrion | 0.6 | 0.84 |
Protein Annotations
| MapMan:15.5.16 | MapMan:16.4.4.2.1 | Gene3D:3.30.160.60 | Gene3D:4.10.1000.10 | EntrezGene:4327109 | EMBL:AK071420 |
| ProteinID:BAF04517.1 | ProteinID:BAS71356.1 | ProteinID:EEE54245.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005689 |
| GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:Matrin/U1-like-C_Znf_C2H2 | EnsemblPlantsGene:Os01g0252200 | EnsemblPlants:Os01t0252200-01 |
| PFAM:PF00642 | PFAM:PF06220 | PFscan:PS50103 | PANTHER:PTHR16465 | UniProt:Q0JP11 | SMART:SM00356 |
| SMART:SM00451 | SUPFAM:SSF57667 | SUPFAM:SSF90229 | InterPro:U1-CZ_Znf_C2H2 | UniParc:UPI00017BE7DF | RefSeq:XP_015610914.1 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : |
Description
ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 3Zinc finger, CCCH-type domain containing protein. (Os01t0252200-01)
Coordinates
chr1:+:8334519..8338574
Molecular Weight (calculated)
17889.0 Da
IEP (calculated)
8.729
GRAVY (calculated)
-0.641
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLGKYYCDY CEKQFQDTPA ARKRHLDGAQ HHRARALWYD AVRRQELHGG GGGAPPLLHQ PGAAAIGVCQ HFVRTGTCKF GDSCRYFHPK PPPANPGPAP
101: SGPVSGPMAQ QSNIQGSQPN FVGYQAADGS SFSGNILGGH TSWGNLPPSL RPPPEGGYPP FPFVDWG
101: SGPVSGPMAQ QSNIQGSQPN FVGYQAADGS SFSGNILGGH TSWGNLPPSL RPPPEGGYPP FPFVDWG
001: MPSGKYYCDY CEKEFQDTQV ARKRHLQSKP HLRAKALWYS SSSSDLVNPQ VSNFATKGLC NRFITSNFCP FGDSCRYFHP NNNTGSTGFT NNTQLRVDML
101: NQQHIQGSTL NRDFVSGRPG TGWFDLPPSL KPPPEQGYPQ LPFIDWG
101: NQQHIQGSTL NRDFVSGRPG TGWFDLPPSL KPPPEQGYPQ LPFIDWG
Arabidopsis Description
C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K1A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.