Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra018081.1-P | |
Bra018956.1-P | |
Bra030396.1-P | |
Bra033769.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G07350.1 | Bra018956.1-P | AT1G52240.1 | 21798944 |
AT3G07350.1 | Bra030396.1-P | AT1G52240.1 | 21798944 |
AT3G07350.1 | Bra018081.1-P | AT3G48150.1 | 21798944 |
AT3G07350.1 | Bra033769.1-P | AT3G48150.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY35924 | Canola | nucleus | 94.67 | 94.67 |
Bra040373.1-P | Field mustard | plastid | 53.67 | 83.85 |
AT3G07350.1 | Thale cress | nucleus | 81.33 | 81.88 |
VIT_00s0337g00040.t01 | Wine grape | cytosol | 46.67 | 49.65 |
Bra013223.1-P | Field mustard | nucleus | 45.33 | 48.23 |
Solyc06g007580.1.1 | Tomato | nucleus | 48.0 | 48.16 |
PGSC0003DMT400051812 | Potato | nucleus | 47.33 | 47.81 |
PGSC0003DMT400053173 | Potato | nucleus | 47.0 | 47.16 |
Solyc06g083160.1.1 | Tomato | nucleus | 45.67 | 46.76 |
KRH07392 | Soybean | nucleus | 43.67 | 43.81 |
PGSC0003DMT400008686 | Potato | cytosol | 39.33 | 43.07 |
KRH46613 | Soybean | mitochondrion, nucleus | 40.0 | 42.11 |
GSMUA_Achr6P21070_001 | Banana | cytosol | 34.67 | 34.9 |
Os01t0915000-01 | Rice | cytosol | 34.0 | 34.81 |
TraesCS4D01G188800.1 | Wheat | mitochondrion | 34.33 | 34.45 |
Os11t0437600-01 | Rice | plastid | 34.67 | 33.99 |
Solyc09g057760.2.1 | Tomato | nucleus | 24.33 | 33.8 |
HORVU4Hr1G054810.1 | Barley | mitochondrion | 33.0 | 33.79 |
Zm00001d042376_P001 | Maize | cytosol | 32.33 | 32.99 |
EES04096 | Sorghum | cytosol | 32.33 | 32.77 |
TraesCS3B01G456400.1 | Wheat | cytosol | 31.33 | 32.64 |
TraesCS4B01G187500.1 | Wheat | mitochondrion | 32.33 | 32.44 |
TraesCS3A01G420900.1 | Wheat | cytosol | 31.33 | 32.41 |
TraesCS3D01G416400.1 | Wheat | cytosol | 31.33 | 32.19 |
Zm00001d012069_P001 | Maize | mitochondrion | 30.33 | 31.6 |
TraesCS4A01G116900.1 | Wheat | plastid | 33.67 | 30.98 |
GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 21.33 | 30.77 |
Bra016797.1-P | Field mustard | cytosol | 27.0 | 27.46 |
Bra019736.1-P | Field mustard | mitochondrion | 26.0 | 26.62 |
Bra001897.1-P | Field mustard | cytosol | 28.0 | 25.23 |
Bra017099.1-P | Field mustard | cytosol | 25.0 | 25.0 |
Bra000140.1-P | Field mustard | cytosol | 25.0 | 24.83 |
Bra036877.1-P | Field mustard | cytosol, plastid | 28.67 | 24.29 |
HORVU3Hr1G093260.1 | Barley | plastid | 32.67 | 24.2 |
Bra033896.1-P | Field mustard | cytosol | 29.33 | 23.98 |
Bra000098.1-P | Field mustard | cytosol | 23.67 | 22.98 |
Bra015689.1-P | Field mustard | nucleus | 19.67 | 22.96 |
Bra015691.1-P | Field mustard | cytosol | 20.0 | 22.81 |
Bra015690.1-P | Field mustard | nucleus | 19.67 | 22.01 |
Bra031136.1-P | Field mustard | nucleus | 19.67 | 20.07 |
Bra036492.1-P | Field mustard | nucleus | 19.33 | 19.53 |
Bra024209.1-P | Field mustard | nucleus | 19.0 | 19.32 |
Bra026262.1-P | Field mustard | nucleus | 18.33 | 18.39 |
Protein Annotations
EnsemblPlants:Bra029641.1 | EnsemblPlants:Bra029641.1-P | EnsemblPlantsGene:Bra029641 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 |
PFAM:PF04720 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0002547FAC | UniProt:M4ELH3 | MapMan:35.2 |
Description
AT3G07350 (E=5e-123) | unknown protein
Coordinates
chrA05:-:22850133..22851035
Molecular Weight (calculated)
33560.6 Da
IEP (calculated)
7.009
GRAVY (calculated)
-0.426
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFSRAKRVT DPLADEAKAR LVGCSFSSGS EHTGDGIDDY DDDSPCLSYL VQGFLEDEAN QDGDKEPRWC ESDSESDSDS DSERVELPDF AEDIVKILRN
101: SLSEDNYGRM VLFHVARAME MLPPLGSDQE QRAVLRRKVM SFLRGFGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPAAA TSHQTVRYIV DLDFASRFQI
201: ARPTAQYSRV LQSLPAVFVG RGDDLKQILR LVCEAARLSL RSRGLTLPPW RKNRYMQTRW LGSYKRTVNL TPSSAAVNTV MCRAVGFDNA VGDRLFVRTR
101: SLSEDNYGRM VLFHVARAME MLPPLGSDQE QRAVLRRKVM SFLRGFGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPAAA TSHQTVRYIV DLDFASRFQI
201: ARPTAQYSRV LQSLPAVFVG RGDDLKQILR LVCEAARLSL RSRGLTLPPW RKNRYMQTRW LGSYKRTVNL TPSSAAVNTV MCRAVGFDNA VGDRLFVRTR
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.