Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G416400.1 | Wheat | cytosol | 96.55 | 95.89 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 95.17 | 95.83 |
| Os01t0915000-01 | Rice | cytosol | 77.93 | 77.13 |
| Zm00001d012069_P001 | Maize | mitochondrion | 75.52 | 76.04 |
| Zm00001d042376_P001 | Maize | cytosol | 76.9 | 75.85 |
| EES04096 | Sorghum | cytosol | 75.52 | 73.99 |
| HORVU3Hr1G093260.1 | Barley | plastid | 84.48 | 60.49 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 38.28 | 53.37 |
| TraesCS4A01G116900.1 | Wheat | plastid | 41.38 | 36.81 |
| Bra040373.1-P | Field mustard | plastid | 23.45 | 35.42 |
| AT3G07350.1 | Thale cress | nucleus | 33.45 | 32.55 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 31.38 | 32.27 |
| Solyc06g007580.1.1 | Tomato | nucleus | 32.76 | 31.77 |
| CDY35924 | Canola | nucleus | 32.76 | 31.67 |
| Bra029641.1-P | Field mustard | nucleus | 32.41 | 31.33 |
| KRH46613 | Soybean | mitochondrion, nucleus | 30.69 | 31.23 |
| CDY60822 | Canola | nucleus | 32.07 | 31.1 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 32.07 | 31.0 |
| AT3G25240.1 | Thale cress | cytosol | 30.0 | 30.96 |
| PGSC0003DMT400053173 | Potato | nucleus | 31.72 | 30.77 |
| CDY34904 | Canola | nucleus | 31.38 | 30.13 |
| CDY52283 | Canola | nucleus | 28.97 | 29.79 |
| Bra013223.1-P | Field mustard | nucleus | 28.62 | 29.43 |
| CDY15101 | Canola | nucleus | 27.93 | 29.14 |
| KRH07392 | Soybean | nucleus | 29.66 | 28.76 |
| Solyc06g083160.1.1 | Tomato | nucleus | 28.97 | 28.67 |
| TraesCS4A01G025500.1 | Wheat | peroxisome, plastid | 30.34 | 27.94 |
| TraesCS6A01G283100.1 | Wheat | cytosol | 29.31 | 27.33 |
| PGSC0003DMT400051812 | Potato | nucleus | 27.93 | 27.27 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 27.24 | 27.15 |
| TraesCS3A01G409700.1 | Wheat | cytosol | 21.38 | 25.62 |
| PGSC0003DMT400008686 | Potato | cytosol | 23.45 | 24.82 |
| TraesCS5A01G439200.1 | Wheat | plastid | 30.69 | 23.73 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 22.41 | 23.3 |
| Solyc09g057760.2.1 | Tomato | nucleus | 16.21 | 21.76 |
| TraesCS3A01G530700.1 | Wheat | plastid | 24.14 | 20.29 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G420900.1 | EnsemblPlantsGene:TraesCS3A01G420900 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF9 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:662412738..662413610
Molecular Weight (calculated)
29974.4 Da
IEP (calculated)
9.357
GRAVY (calculated)
-0.103
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVYIRLDDA VRARLRGDGG GTSSGSDHDA SACLSGLVQA FLETDAAAGA GDDAGGPAPK GRDGYDSDDA DGAAEAAAAS VRELLDPPAA EDPFRIRLAA
101: AVSAALDAEA PLRGHGAAFR RAVMRRLRAA GYDAGVCRSR WETCGNLTAG TYEYVDVVVP AAGKAARYIV DADFRAGLQV ARATAEYAVV VAAVPARAVV
201: AREEAVGRAV RVAADAARRS LRAHGLHVPP WRKSRYMLAK WLGPYKRSPS SSSPASGAMP APGTTGLDVI KCRAVGFFPS QTAAPAARIK
101: AVSAALDAEA PLRGHGAAFR RAVMRRLRAA GYDAGVCRSR WETCGNLTAG TYEYVDVVVP AAGKAARYIV DADFRAGLQV ARATAEYAVV VAAVPARAVV
201: AREEAVGRAV RVAADAARRS LRAHGLHVPP WRKSRYMLAK WLGPYKRSPS SSSPASGAMP APGTTGLDVI KCRAVGFFPS QTAAPAARIK
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.