CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07517
EES19937
KXG33101
OQU87589

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G07350.1	EES19937	AT1G52240.1	21798944
AT3G07350.1	KXG33101	AT1G52240.1	21798944
AT3G07350.1	OQU87589	AT1G52240.1	21798944
AT3G07350.1	EES07517	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042376_P001	Maize	cytosol	87.5	88.1
Zm00001d012069_P001	Maize	mitochondrion	81.76	84.03
Os01t0915000-01	Rice	cytosol	79.39	80.2
TraesCS3B01G456400.1	Wheat	cytosol	73.65	75.69
TraesCS3A01G420900.1	Wheat	cytosol	73.99	75.52
TraesCS3D01G416400.1	Wheat	cytosol	73.65	74.66
HORVU3Hr1G093260.1	Barley	plastid	69.59	50.86
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	35.47	50.48
Bra040373.1-P	Field mustard	plastid	23.99	36.98
CDY35924	Canola	nucleus	33.78	33.33
AT3G07350.1	Thale cress	nucleus	33.45	33.22
CDY60822	Canola	nucleus	33.11	32.78
Solyc06g007580.1.1	Tomato	nucleus	32.77	32.44
Bra029641.1-P	Field mustard	nucleus	32.77	32.33
CDY28060	Canola	cytosol, nucleus, plastid	32.77	32.33
VIT_00s0337g00040.t01	Wine grape	cytosol	30.74	32.27
CDY34904	Canola	nucleus	32.77	32.12
PGSC0003DMT400053173	Potato	nucleus	31.76	31.44
KRH07392	Soybean	nucleus	31.42	31.1
AT3G25240.1	Thale cress	cytosol	29.39	30.96
KRH46613	Soybean	mitochondrion, nucleus	29.05	30.18
EER95459	Sorghum	plastid	30.41	30.1
Solyc06g083160.1.1	Tomato	nucleus	28.72	29.01
Bra013223.1-P	Field mustard	nucleus	27.36	28.72
CDY52283	Canola	nucleus	27.03	28.37
EER91615	Sorghum	mitochondrion	28.04	28.33
PGSC0003DMT400051812	Potato	nucleus	28.38	28.28
CDY15101	Canola	nucleus	25.68	27.34
PGSC0003DMT400008686	Potato	cytosol	24.32	26.28
EES07354	Sorghum	cytosol	27.03	25.89
EES19824	Sorghum	cytosol	25.34	24.92
EES01469	Sorghum	nucleus	23.65	24.82
EER93295	Sorghum	plastid	29.39	22.14
OQU87982	Sorghum	cytosol	20.95	22.06
Solyc09g057760.2.1	Tomato	nucleus	15.88	21.76
EER98072	Sorghum	cytosol, plastid	30.74	19.2

Protein Annotations

EnsemblPlants:EES04096	EnsemblPlantsGene:SORBI_3003G400200	EntrezGene:8078721	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF9
PFAM:PF04720	ProteinID:EES04096	ProteinID:EES04096.1	RefSeq:XP_002458976.1	SEG:seg	TIGRFAMs:TIGR01615
unigene:Sbi.1549	UniParc:UPI0001A85541	UniProt:C5XG65	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr3:-:70883840..70885508

Molecular Weight (calculated)

30878.7 Da

IEP (calculated)

8.860

GRAVY (calculated)

-0.075

Length

296 amino acids

Sequence
(BLAST)

001: MAVYIRLDDA VRARLRGDAA GCTITSSGSD HDASACLSEL VQAFLETGAG AAEEGVPGPA PKEYDESGEE DAPGRAAAAA ASVRALLDPP AEEDVFRIRL
101: AAAVATAMEV EAALRAHGAS FRRAVVRRLR GAGYDAGVCK SRWEASGGIT AGTYEYVDVV APLAADGRKR ARYIVDADFR AGLEVARATP EYAAVVAEVP
201: ASAVVAREES VGRAVRVASD AARRSLRAHG LHVPPWRKTR YMLAKWLGPY KRSTATSLPA ANAGAMPMTG GAGMDIKCRA VGFFAPPATA PAARIK

Best Arabidopsis Sequence Match ( AT3G07350.1 )
(BLAST)

001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR

Arabidopsis Description

F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.