CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES19518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	EES19518	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018962_P001	Maize	mitochondrion, plastid	63.71	78.85
Zm00001d007820_P002	Maize	plastid	64.77	76.56
EER93295	Sorghum	plastid	49.79	60.05
EER91615	Sorghum	mitochondrion	30.17	48.81
EER95459	Sorghum	plastid	30.38	48.16
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	34.81	45.96
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	36.5	45.29
GSMUA_Achr8P20590_001	Banana	plastid	33.76	44.08
GSMUA_Achr9P25590_001	Banana	plastid	35.65	41.52
VIT_05s0020g04500.t01	Wine grape	nucleus	33.33	40.93
Bra036877.1-P	Field mustard	cytosol, plastid	30.17	40.4
CDY16266	Canola	nucleus	30.38	40.34
CDY29750	Canola	nucleus, plastid	29.96	40.11
PGSC0003DMT400041951	Potato	cytosol	31.01	39.73
KRH69065	Soybean	cytosol	29.75	38.52
CDX92970	Canola	cytosol	27.0	38.44
Bra001897.1-P	Field mustard	cytosol	27.0	38.44
KRH34359	Soybean	plastid	31.22	38.24
AT4G14620.1	Thale cress	cytosol	27.43	38.12
AT2G38820.2	Thale cress	cytosol	24.89	38.06
KRH32089	Soybean	cytosol	27.22	38.05
KRG92439	Soybean	plastid	31.43	37.91
KRH71351	Soybean	cytosol	28.69	37.88
KRH31637	Soybean	cytosol	30.59	37.86
CDY18366	Canola	cytosol	23.63	37.33
Bra017099.1-P	Field mustard	cytosol	23.63	37.33
VIT_00s0179g00360.t01	Wine grape	cytosol	31.22	37.28
Bra033896.1-P	Field mustard	cytosol	28.69	37.06
PGSC0003DMT400015576	Potato	cytosol, plastid	30.8	36.87
CDX93300	Canola	cytosol	23.21	36.67
CDY10330	Canola	cytosol	28.06	36.34
CDX94877	Canola	cytosol	26.58	36.31
Solyc06g053910.2.1	Tomato	cytosol, plastid	29.54	35.99
AT3G22970.1	Thale cress	plastid	28.06	35.95
Solyc09g082980.2.1	Tomato	nucleus	30.17	35.93
KRG95606	Soybean	cytosol	27.22	35.73
AT3G54550.1	Thale cress	plastid	21.31	35.07
CDY07696	Canola	cytosol	22.57	34.29
Bra000098.1-P	Field mustard	cytosol	22.15	33.98
CDY14428	Canola	cytosol	22.15	33.76
CDY10329	Canola	plastid	26.37	33.07
PGSC0003DMT400049773	Potato	nucleus	28.69	31.34
EES01469	Sorghum	nucleus	18.35	30.85
EES04096	Sorghum	cytosol	19.2	30.74
Solyc09g065760.2.1	Tomato	cytosol, plastid	27.85	30.34
EES19824	Sorghum	cytosol	17.93	28.24
EES07354	Sorghum	cytosol	18.35	28.16
OQU87982	Sorghum	cytosol	14.77	24.91

Protein Annotations

EnsemblPlants:EER98072	EnsemblPlantsGene:SORBI_3002G055400	EntrezGene:8060750	InterPro:PDDEXK-like	ncoils:Coil	PANTHER:PTHR31579
PANTHER:PTHR31579:SF19	PFAM:PF04720	ProteinID:EER98072	ProteinID:EER98072.2	SEG:seg	TIGRFAMs:TIGR01615
unigene:Sbi.432	UniParc:UPI00081AD0F6	UniProt:C5XB36	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr2:-:5278080..5286244

Molecular Weight (calculated)

50452.0 Da

IEP (calculated)

8.905

GRAVY (calculated)

-0.343

Length

474 amino acids

Sequence
(BLAST)

001: MPAQPHEIPW GTSRLPCPCP THFSLYIHLL SHTHSVLGRW GVVREARAGA VRPGSVLVRS SDATPLLPKT SFGRFNDDGV RSVNQQGTIE GRPPAAPGRV
101: SMLRRLLVRV TPAERLVGDG KERDKDEKAP ATGGAGAEAD VGSVALDKMV ISFMEESSAA VERPPRGRCG NCFNGNQDGI SDDEDFDFLP SASHPAAPPA
201: AAGDALELLK GLVQCASTAE RNLLADASRI AERCRKGGYG SGCGRKKADV RRAVADGLRA LGYDAAVCTS RWEKTPSHPA GEHEYIDALV VESGSGSGSG
301: AGRLVVEVDF RSEFEVARPT KAYRLALQAL PPLFVGTPDR LGRIVAVVTE AARQSLRKRG LHFPPWRNHE YMRAKWLSPH SRSGNPDKTP APALATPISV
401: ATFSGEFELR FDDKPKASAA DIPAGGEEDK KITVVVSPTP EDPGAAGKLR LSPQPPQAKM KVVTGLASLL LLAS

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.