Factsheet for Zm00001d018962_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d038170_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	Zm00001d038170_P001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007820_P002	Maize	plastid	82.51	78.8
EER98072	Sorghum	cytosol, plastid	78.85	63.71
Zm00001d034444_P002	Maize	plastid	62.14	58.77
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	38.64	49.33
Zm00001d027763_P001	Maize	plastid	38.64	49.33
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	48.04	48.17
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	44.91	47.91
GSMUA_Achr8P20590_001	Banana	plastid	43.86	46.28
GSMUA_Achr9P25590_001	Banana	plastid	46.21	43.49
VIT_05s0020g04500.t01	Wine grape	nucleus	41.78	41.45
Bra036877.1-P	Field mustard	cytosol, plastid	37.08	40.11
CDY16266	Canola	nucleus	37.34	40.06
CDY29750	Canola	nucleus, plastid	36.81	39.83
KRH34359	Soybean	plastid	40.21	39.79
KRG92439	Soybean	plastid	40.47	39.44
CDX92970	Canola	cytosol	33.94	39.04
Bra001897.1-P	Field mustard	cytosol	33.94	39.04
KRH71351	Soybean	cytosol	36.03	38.44
PGSC0003DMT400041951	Potato	cytosol	37.08	38.38
KRH32089	Soybean	cytosol	33.94	38.35
KRH69065	Soybean	cytosol	36.55	38.25
AT2G38820.2	Thale cress	cytosol	30.55	37.74
PGSC0003DMT400015576	Potato	cytosol, plastid	38.9	37.63
Bra033896.1-P	Field mustard	cytosol	36.03	37.6
AT4G14620.1	Thale cress	cytosol	33.42	37.54
CDX94877	Canola	cytosol	33.68	37.18
KRH31637	Soybean	cytosol	37.08	37.08
CDY18366	Canola	cytosol	28.98	37.0
Bra017099.1-P	Field mustard	cytosol	28.98	37.0
Solyc09g082980.2.1	Tomato	nucleus	38.38	36.93
VIT_00s0179g00360.t01	Wine grape	cytosol	38.12	36.78
CDY10330	Canola	cytosol	34.99	36.61
CDX93300	Canola	cytosol	28.46	36.33
KRG95606	Soybean	cytosol	34.2	36.29
AT3G22970.1	Thale cress	plastid	34.99	36.22
AT3G54550.1	Thale cress	plastid	27.15	36.11
Solyc06g053910.2.1	Tomato	cytosol, plastid	35.77	35.22
Zm00001d042376_P001	Maize	cytosol	26.63	34.69
Zm00001d012069_P001	Maize	mitochondrion	25.85	34.38
CDY07696	Canola	cytosol	27.68	33.97
Bra000098.1-P	Field mustard	cytosol	27.15	33.66
CDY10329	Canola	plastid	33.16	33.6
CDY14428	Canola	cytosol	27.15	33.44
Zm00001d043444_P001	Maize	nucleus	23.24	31.34
PGSC0003DMT400049773	Potato	nucleus	34.99	30.88
Solyc09g065760.2.1	Tomato	cytosol, plastid	33.94	29.89
Zm00001d042631_P001	Maize	cytosol	15.67	28.17
Zm00001d051691_P001	Maize	cytosol	22.72	27.71
Zm00001d041955_P001	Maize	plastid	21.15	23.55

Protein Annotations

EnsemblPlants:Zm00001d018962_P001	EnsemblPlants:Zm00001d018962_T001	EnsemblPlantsGene:Zm00001d018962	EntrezGene:100382025	InterPro:PDDEXK-like	PANTHER:PTHR31579
PANTHER:PTHR31579:SF19	PFAM:PF04720	ProteinID:ONM51737.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002219897
UniProt:A0A1D6HTN2	MapMan:35.2	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024 scaffold_179.assembly12x (Fragment)

Coordinates

chr7:+:10831566..10833533

Molecular Weight (calculated)

40770.3 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.410

Length

383 amino acids

Sequence
(BLAST)

001: MTFRFPVKNQ QGTIDGSPFA PATARVSMFR RLMVRVTPAE RLAAGDGKER EKDERGGEAE AGSVGLDKMV LSFMEESSAA VERPSRGRCG NCFNGNHQDG
101: SDDEDFDFLP SASAPAAAPA AGGDALELLK GLVQCASTAE RNLLADASRI AERCGRKKAD ARRAVADGLR ALGYDAAVCT SRWDKAPSHP AGEHEYIDAV
201: VAEAEPGATD GVRVRLVVEV DFRAEFEVAR PTKAYRAALQ ALPPLFVGTP ERLGRVVAVV ADAARQSLRK RGLHLPPWRK HEYMRAKWLS PHARSGGGGG
301: PDETPALATP VPAFSGVFEP RFGEKPKAPG DDGIPDGGDD KKATVVVPPS PWRPEAASKL SPQPPQARRK VVTGLASLLL LAS

Best Arabidopsis Sequence Match ( AT2G38820.2 )
(BLAST)

001: MPLHMKIQPI DESDVSEEVP YPETMRQMPK SRLKRLFERQ FTNKNVSEKF TGSDVEAPLS RGNSGDFEPS SVCLAKMVLN FMEDNNGGEK QRCGRSRCNC
101: FSGSGTESSD DETECSSGEA CEILKSLVLC KSIRVRNLLT DVTKIAETSK NCKLKDGSCL KSVANGLVSL GYDAALCKSR WEKSPSCPAG EYEYVDVIMK
201: GERLLIDIDF KSKFEIARAT KTYKSMLQTL PYIFVGKADR LQKIIVLICK AAKQSLKKKG LHVPPWRRAE YVKSKWLSSH VRVDQNSNGE VKQESVEVIA
301: ESVSSIVFGV

Arabidopsis Description

Protein of unknown function (DUF506) [Source:TAIR;Acc:AT2G38820]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.