Factsheet for Zm00001d041955_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0973600-01	Rice	plastid	73.26	74.78
TraesCS3D01G536200.1	Wheat	plastid	70.93	70.52
TraesCS3A01G530700.1	Wheat	plastid	70.64	70.43
TraesCS3B01G600900.1	Wheat	plastid	71.22	70.2
HORVU3Hr1G115940.1	Barley	plastid	70.35	57.21
VIT_13s0019g01100.t01	Wine grape	nucleus	45.06	56.99
GSMUA_Achr10P...	Banana	mitochondrion	54.94	54.31
KRH70457	Soybean	cytosol	47.09	52.6
KRH01670	Soybean	nucleus	46.22	51.62
AT2G39650.1	Thale cress	cytosol	43.6	51.55
CDY07644	Canola	cytosol	44.19	50.5
Bra000140.1-P	Field mustard	cytosol	44.19	50.33
CDY24955	Canola	cytosol	44.19	50.33
Solyc06g005480.2.1	Tomato	cytosol	40.7	44.87
PGSC0003DMT400025041	Potato	cytosol	40.41	44.55
GSMUA_Achr5P07100_001	Banana	cytosol	52.91	35.2
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	24.13	27.67
Zm00001d042631_P001	Maize	cytosol	16.86	27.23
Zm00001d027763_P001	Maize	plastid	22.97	26.33
Zm00001d012069_P001	Maize	mitochondrion	20.93	25.0
Zm00001d043444_P001	Maize	nucleus	20.64	25.0
Zm00001d042376_P001	Maize	cytosol	20.93	24.49
Zm00001d051691_P001	Maize	cytosol	20.64	22.61
Zm00001d018962_P001	Maize	mitochondrion, plastid	23.55	21.15
Zm00001d034444_P002	Maize	plastid	24.13	20.49
Zm00001d007820_P002	Maize	plastid	22.67	19.45

Protein Annotations

EMBL:BT038879	EMBL:EU954051	EnsemblPlants:Zm00001d041955_P001	EnsemblPlants:Zm00001d041955_T001	EnsemblPlantsGene:Zm00001d041955	EntrezGene:100280829
InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19	PFAM:PF04720	ProteinID:ONM34200.1	SEG:seg
TIGRFAMs:TIGR01615	UniParc:UPI00017B7A74	UniProt:B4FP41	MapMan:35.2	:	:

Description

plant-specific domain TIGR01615 family protein expressed

Coordinates

chr3:-:145502932..145505218

Molecular Weight (calculated)

37719.5 Da

IEP (calculated)

8.793

GRAVY (calculated)

-0.269

Length

344 amino acids

Sequence
(BLAST)

001: MMMLTKEFAL SPPPGVVPRR RPSARVAPTA ARGGSPVPDL WLRTAAPVPA SAAAGFASSH SHDGDCDLAM LVTDFLENGA TAGSGDSRNS SDSESGLPDL
101: AHLADTISML KQGGDEKENE LLAMVHSLLL SIHEPQLQPF KTGQCGGSCI RHLLVKLLRY SGNDAAVCTS KWQGFDKIPG GDYEYIDVIM HGDTTAPERL
201: IVDIDFRSHF EIARAVDSYG TLLNSLPVVF VGTLPRLKQF LHVMVDAAKW SLKQNSMPLP PWRSLPYLQA KWQSKYERKD SITEGGFQST SSDHALCIGH
301: LKRLKTSLQL ELETAGLLMM PIKANKKRMP KSSERRRRRS LLSC

Best Arabidopsis Sequence Match ( AT2G39650.1 )
(BLAST)

001: MGMDLRVVPA EEWLNRGIDS SHDGEHDLGL MVTDFLETGG GSGGAGSWCS SDSDSGFPDP SYLSDKIQYL KYSMAQHETE VLSVVRTLML TIKEKDLHSV
101: KSGTCNASCI RFYLAKLLRL SGYDAAVCSA RWQGGGKVPG GDNEYIDIIL SDTEVGQDDR LIVDIDFRSH FEIARAVDSY QRIMESLPVV YVGTVARLNQ
201: FLQVMVDAAK FSLKQNSMPL PPWRSLNYLR SKWHSPHKRH LGPIDQQGPG MFSPGLHGQC AENLKRLQFA LQVEQEAERF MKKKSGFSRR N

Arabidopsis Description

At2g39650 [Source:UniProtKB/TrEMBL;Acc:O48813]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.