Factsheet for PGSC0003DMT400025041

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005480.2.1	Tomato	cytosol	95.19	95.19
VIT_13s0019g01100.t01	Wine grape	nucleus	45.51	52.21
KRH01670	Soybean	nucleus	49.36	50.0
KRH70457	Soybean	cytosol	49.36	50.0
AT2G39650.1	Thale cress	cytosol	42.31	45.36
GSMUA_Achr10P...	Banana	mitochondrion	48.4	43.39
CDY07644	Canola	cytosol	41.67	43.19
Bra000140.1-P	Field mustard	cytosol	41.67	43.05
Os01t0973600-01	Rice	plastid	46.15	42.73
CDY24955	Canola	cytosol	41.35	42.72
Zm00001d041955_P001	Maize	plastid	44.55	40.41
TraesCS3A01G530700.1	Wheat	plastid	44.23	40.0
TraesCS3D01G536200.1	Wheat	plastid	43.91	39.6
TraesCS3B01G600900.1	Wheat	plastid	44.23	39.54
HORVU3Hr1G115940.1	Barley	plastid	44.87	33.1
PGSC0003DMT400079089	Potato	cytosol	15.06	30.92
GSMUA_Achr5P07100_001	Banana	cytosol	48.08	29.01
PGSC0003DMT400051812	Potato	nucleus	21.47	22.56
PGSC0003DMT400008686	Potato	cytosol	18.91	21.53
PGSC0003DMT400053173	Potato	nucleus	20.51	21.4
PGSC0003DMT400033381	Potato	cytosol, mitochondrion, nucleus	20.19	20.59
PGSC0003DMT400045914	Potato	cytosol, extracellular, nucleus	17.63	19.64
PGSC0003DMT400015576	Potato	cytosol, plastid	24.68	19.44
PGSC0003DMT400047228	Potato	nucleus	17.63	19.37
PGSC0003DMT400041951	Potato	cytosol	22.76	19.19
PGSC0003DMT400076442	Potato	nucleus	17.63	18.21
PGSC0003DMT400049773	Potato	nucleus	23.08	16.59

Protein Annotations

EnsemblPlants:PGSC0003DMT400025041	EnsemblPlantsGene:PGSC0003DMG400009671	EntrezGene:102589081	InterPro:PDDEXK-like	PANTHER:PTHR31579	PFAM:PF04720
PGSC:PGSC0003DMG400009671	RefSeq:XP_006361204.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000296172A	UniProt:M1AKX7
MapMan:35.2	:	:	:	:	:

Description

Plant-specific domain TIGR01615 family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009671]

Coordinates

chr6:+:5240906..5245357

Molecular Weight (calculated)

34288.7 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.262

Length

312 amino acids

Sequence
(BLAST)

001: MRNNKRRSLV VVDDGGGGGD WLNRGDGVGS GGCYSHESEP DLAAMVSDFL ESSSAGAESR YISDNDPGYS DLALLADTIS LYKNSVDRYE SDLTMVVHSL
101: ILSMTESFHI GKPETCNASC IRSYLVKLLQ SCGFNADMCA TKWQGCGKIP GGEHEYIEVI SHGNDGCSER YIIDLDFRSH FEIARAVKSY NVVLSCLPPV
201: YVGTVTKLKL YLQAMVEAAK CSLKQNSMPL PPWRSLAYLE AKWESSHRVA NVQVQSSVSS SNSSHRHCTE LLWRIKSCIG SEIKAKGFLV LKTCRKRQGL
301: KIESSHSSPV TP

Best Arabidopsis Sequence Match ( AT2G39650.1 )
(BLAST)

001: MGMDLRVVPA EEWLNRGIDS SHDGEHDLGL MVTDFLETGG GSGGAGSWCS SDSDSGFPDP SYLSDKIQYL KYSMAQHETE VLSVVRTLML TIKEKDLHSV
101: KSGTCNASCI RFYLAKLLRL SGYDAAVCSA RWQGGGKVPG GDNEYIDIIL SDTEVGQDDR LIVDIDFRSH FEIARAVDSY QRIMESLPVV YVGTVARLNQ
201: FLQVMVDAAK FSLKQNSMPL PPWRSLNYLR SKWHSPHKRH LGPIDQQGPG MFSPGLHGQC AENLKRLQFA LQVEQEAERF MKKKSGFSRR N

Arabidopsis Description

At2g39650 [Source:UniProtKB/TrEMBL;Acc:O48813]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.