Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g042630.1.1 | Tomato | cytosol | 90.71 | 89.44 |
| VIT_18s0001g06070.t01 | Wine grape | nucleus | 43.21 | 45.15 |
| KRH27801 | Soybean | cytosol | 37.86 | 38.55 |
| KRH77753 | Soybean | cytosol | 35.71 | 36.76 |
| PGSC0003DMT400079089 | Potato | cytosol | 16.07 | 29.61 |
| PGSC0003DMT400047228 | Potato | nucleus | 24.64 | 24.3 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 24.64 | 22.55 |
| PGSC0003DMT400076442 | Potato | nucleus | 23.93 | 22.19 |
| PGSC0003DMT400053173 | Potato | nucleus | 20.71 | 19.4 |
| PGSC0003DMT400008686 | Potato | cytosol | 18.21 | 18.61 |
| PGSC0003DMT400025041 | Potato | cytosol | 19.64 | 17.63 |
| PGSC0003DMT400051812 | Potato | nucleus | 18.57 | 17.51 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 21.79 | 15.4 |
| PGSC0003DMT400041951 | Potato | cytosol | 19.64 | 14.86 |
| PGSC0003DMT400049773 | Potato | nucleus | 21.07 | 13.59 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400045914 | EnsemblPlantsGene:PGSC0003DMG400017807 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF17 | PFAM:PF04720 |
| PGSC:PGSC0003DMG400017807 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000296C66B | UniProt:M1BIC9 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400017807]
Coordinates
chr11:-:27874845..27879619
Molecular Weight (calculated)
31951.5 Da
IEP (calculated)
8.480
GRAVY (calculated)
-0.440
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MREENKIISS LYHNIFILTN DDEEGGGCCN DENPSTYVFG CEDENNNNDT QITMENAIYW ESQEALLKEI LEQYMLIGSK VREGITRSVE VARDVGITNV
101: ICECSNGKVG RPSSCAKCFR RRVVEELCEK GFNASLCTSI WNHTSKMPGG RHEYIQVIAS TQGRKKKVPL LIELEFRDEF KLAKSCKEYS KLTTLLPQVF
201: IGKSEHLNAI VRLMCDAAKR STAQQRIHLA PWRKRNFMQM KWSAYNSEKR LLHHNQITLT KLTQQLLFRP PAAAAALKVA
101: ICECSNGKVG RPSSCAKCFR RRVVEELCEK GFNASLCTSI WNHTSKMPGG RHEYIQVIAS TQGRKKKVPL LIELEFRDEF KLAKSCKEYS KLTTLLPQVF
201: IGKSEHLNAI VRLMCDAAKR STAQQRIHLA PWRKRNFMQM KWSAYNSEKR LLHHNQITLT KLTQQLLFRP PAAAAALKVA
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.