Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045914 | Potato | cytosol, extracellular, nucleus | 45.15 | 43.21 |
| KRH77753 | Soybean | cytosol | 43.66 | 43.01 |
| KRH27801 | Soybean | cytosol | 43.66 | 42.55 |
| Solyc11g042630.1.1 | Tomato | cytosol | 43.66 | 41.2 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 27.99 | 24.75 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 27.61 | 23.95 |
| VIT_18s0001g15610.t01 | Wine grape | cytosol | 24.25 | 23.55 |
| VIT_04s0044g00970.t01 | Wine grape | cytosol | 22.76 | 22.51 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 22.76 | 21.63 |
| VIT_13s0019g01100.t01 | Wine grape | nucleus | 20.9 | 20.59 |
| VIT_12s0059g01640.t01 | Wine grape | nucleus | 20.52 | 18.27 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 24.25 | 16.84 |
| VIT_00s0179g00360.t01 | Wine grape | cytosol | 23.51 | 15.87 |
Protein Annotations
| EntrezGene:100244818 | wikigene:100244818 | MapMan:35.2 | EMBL:AM479855 | ProteinID:CAN64141 | ProteinID:CAN64141.1 |
| ProteinID:CBI31332 | ProteinID:CBI31332.3 | UniProt:D7TLG0 | EMBL:FN595996 | EntrezGene:LOC100244818 | wikigene:LOC100244818 |
| InterPro:PDDEXK-like | PFAM:PF04720 | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF17 | TIGR:TC63118 | TIGRFAMs:TIGR01615 |
| UniParc:UPI000198566F | ArrayExpress:VIT_18s0001g06070 | EnsemblPlantsGene:VIT_18s0001g06070 | EnsemblPlants:VIT_18s0001g06070.t01 | unigene:Vvi.11760 | RefSeq:XP_002278002 |
| RefSeq:XP_002278002.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr18_random:-:4609011..4611070
Molecular Weight (calculated)
31055.0 Da
IEP (calculated)
6.625
GRAVY (calculated)
-0.696
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MGHLIEEKAL GDDHQRGDSL EEKISLFFDE EDEELDRNSE GDWADDEAAN NELHDPIERK EFWDSQEALL LEIMERCNSM GAKLREEIGR VVERARETLV
101: CSCSKSNSDE CALCLRRRVV DLLCLKGFSA SLRTSKWRHT HKFPGGSHEY IEVMASTPGR KKQIPFLIEL EFRTEFEMAK ACDEYRRLIA QLPKSYIGKS
201: DYLNAILRVV CDAAKRSMKE QKIHMGPWRK RSFMQMKWSG YNDRKQPSKD QPWNKFSLSG ITAAVVVK
101: CSCSKSNSDE CALCLRRRVV DLLCLKGFSA SLRTSKWRHT HKFPGGSHEY IEVMASTPGR KKQIPFLIEL EFRTEFEMAK ACDEYRRLIA QLPKSYIGKS
201: DYLNAILRVV CDAAKRSMKE QKIHMGPWRK RSFMQMKWSG YNDRKQPSKD QPWNKFSLSG ITAAVVVK
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.