Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_05s0020g04420.t01 | |
| VIT_06s0009g01910.t01 | |
| VIT_08s0040g00470.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079089 | Potato | cytosol | 34.06 | 61.84 |
| Solyc06g054640.1.1 | Tomato | cytosol | 42.03 | 52.25 |
| VIT_04s0044g00970.t01 | Wine grape | cytosol | 51.09 | 52.03 |
| GSMUA_Achr7P03040_001 | Banana | nucleus | 42.75 | 45.56 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 30.07 | 34.16 |
| TraesCS3D01G404300.1 | Wheat | nucleus | 29.71 | 33.33 |
| TraesCS3B01G442800.1 | Wheat | cytosol | 28.99 | 33.33 |
| TraesCS3A01G409700.1 | Wheat | cytosol | 28.99 | 33.06 |
| Zm00001d042631_P001 | Maize | cytosol | 25.0 | 32.39 |
| OQU87982 | Sorghum | cytosol | 32.97 | 32.38 |
| AT1G77145.1 | Thale cress | cytosol | 28.26 | 30.0 |
| Bra015689.1-P | Field mustard | nucleus | 27.9 | 29.96 |
| CDX87538 | Canola | nucleus | 27.9 | 29.96 |
| CDX88346 | Canola | nucleus | 27.9 | 29.96 |
| CDX88345 | Canola | nucleus | 28.99 | 29.85 |
| CDX87539 | Canola | nucleus | 28.62 | 29.48 |
| Bra015690.1-P | Field mustard | nucleus | 28.62 | 29.48 |
| CDX88344 | Canola | cytosol | 28.26 | 29.43 |
| AT1G77160.1 | Thale cress | cytosol | 27.9 | 29.28 |
| Bra015691.1-P | Field mustard | cytosol | 27.54 | 28.9 |
| Os01t0879600-00 | Rice | plastid | 31.52 | 28.81 |
| CDX87540 | Canola | cytosol | 27.17 | 28.52 |
| VIT_18s0001g06070.t01 | Wine grape | nucleus | 23.55 | 24.25 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 24.64 | 24.11 |
| VIT_13s0019g01100.t01 | Wine grape | nucleus | 22.46 | 22.79 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 23.19 | 20.71 |
| VIT_05s0020g04500.t01 | Wine grape | nucleus | 28.62 | 20.47 |
| VIT_00s0179g00360.t01 | Wine grape | cytosol | 28.99 | 20.15 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 21.74 | 19.8 |
| VIT_12s0059g01640.t01 | Wine grape | nucleus | 21.38 | 19.6 |
Protein Annotations
| ArrayExpress:VIT_18s0001g15610 | EMBL:FN595227 | EnsemblPlants:VIT_18s0001g15610.t01 | EnsemblPlantsGene:VIT_18s0001g15610 | InterPro:PDDEXK-like | PANTHER:PTHR31579 |
| PANTHER:PTHR31579:SF14 | PFAM:PF04720 | ProteinID:CBI19973 | ProteinID:CBI19973.3 | SEG:seg | TIGRFAMs:TIGR01615 |
| UniParc:UPI0001BE18D4 | UniProt:E0CQP4 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr18:-:13733152..13734200
Molecular Weight (calculated)
30472.7 Da
IEP (calculated)
8.275
GRAVY (calculated)
-0.267
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLGEEELV QMVRDFIESE SPSPFSLPSS PSNSVNHDNS TTLTLQEILW RVTGDEVEVL DKILMYVSSV GNAGDAATNL QKWVVMRLKM DGFEASLCKT
101: SRRTATGGIF PCGYEYIEVM LKAAINGVKA TRLIVDMDFR SQFELARPTP TYTDLINTLP SIFVGNEEKL NKIISLLCAA AKQSLKERGL HIPPWRKANH
201: MQSKWLSENC KKVPIFPAPK SNTEVGGMDK WESKAPQCSS KFSKWVPPVV KPRTRGMDGG GSALSSQFSN MGINCC
101: SRRTATGGIF PCGYEYIEVM LKAAINGVKA TRLIVDMDFR SQFELARPTP TYTDLINTLP SIFVGNEEKL NKIISLLCAA AKQSLKERGL HIPPWRKANH
201: MQSKWLSENC KKVPIFPAPK SNTEVGGMDK WESKAPQCSS KFSKWVPPVV KPRTRGMDGG GSALSSQFSN MGINCC
001: MGSLGEEDFE KLVLGYIESP MTVSQHINTS SKALITLQEI FLQEILRAKG VEEKEMEEKI RSYINRGRLS YEGDDEKRDV MNKIVSKLRS EGYNASLSKT
101: SWDSSFDHRE GCRVFTCSRK YEYIDAMVIG DSDRDGVSKL KRVIIDLDFK TQFELARQTE AYKDMTEMLP TVFVATEGRL RRVVSLVCGE MKKSMKKEGM
201: SRPPWRTSRY MQSKWLPENC RRDAGCKKGS WSWSVFDDGG EGIGEARSWT VSGPKTKCCF PIF
101: SWDSSFDHRE GCRVFTCSRK YEYIDAMVIG DSDRDGVSKL KRVIIDLDFK TQFELARQTE AYKDMTEMLP TVFVATEGRL RRVVSLVCGE MKKSMKKEGM
201: SRPPWRTSRY MQSKWLPENC RRDAGCKKGS WSWSVFDDGG EGIGEARSWT VSGPKTKCCF PIF
Arabidopsis Description
Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q45GL9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.