Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g054640.1.1 | Tomato | cytosol | 98.68 | 67.57 |
| VIT_18s0001g15610.t01 | Wine grape | cytosol | 61.84 | 34.06 |
| Zm00001d042631_P001 | Maize | cytosol | 44.08 | 31.46 |
| GSMUA_Achr7P03040_001 | Banana | nucleus | 50.66 | 29.73 |
| TraesCS3A01G409700.1 | Wheat | cytosol | 42.76 | 26.86 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 42.76 | 26.75 |
| TraesCS3B01G442800.1 | Wheat | cytosol | 42.11 | 26.67 |
| TraesCS3D01G404300.1 | Wheat | nucleus | 42.76 | 26.42 |
| OQU87982 | Sorghum | cytosol | 44.74 | 24.2 |
| AT1G77145.1 | Thale cress | cytosol | 39.47 | 23.08 |
| Bra015689.1-P | Field mustard | nucleus | 38.16 | 22.57 |
| CDX87538 | Canola | nucleus | 38.16 | 22.57 |
| CDX88346 | Canola | nucleus | 38.16 | 22.57 |
| AT1G77160.1 | Thale cress | cytosol | 38.82 | 22.43 |
| Os01t0879600-00 | Rice | plastid | 44.08 | 22.19 |
| CDX88344 | Canola | cytosol | 38.16 | 21.89 |
| Bra015691.1-P | Field mustard | cytosol | 36.84 | 21.29 |
| CDX87540 | Canola | cytosol | 36.18 | 20.91 |
| Bra015690.1-P | Field mustard | nucleus | 36.84 | 20.9 |
| CDX87539 | Canola | nucleus | 36.84 | 20.9 |
| CDX88345 | Canola | nucleus | 36.18 | 20.52 |
| PGSC0003DMT400008686 | Potato | cytosol | 34.87 | 19.34 |
| PGSC0003DMT400051812 | Potato | nucleus | 37.5 | 19.19 |
| PGSC0003DMT400053173 | Potato | nucleus | 35.53 | 18.06 |
| PGSC0003DMT400041951 | Potato | cytosol | 40.79 | 16.76 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 32.89 | 16.34 |
| PGSC0003DMT400045914 | Potato | cytosol, extracellular, nucleus | 29.61 | 16.07 |
| PGSC0003DMT400049773 | Potato | nucleus | 44.74 | 15.67 |
| PGSC0003DMT400015576 | Potato | cytosol, plastid | 40.79 | 15.66 |
| PGSC0003DMT400076442 | Potato | nucleus | 30.92 | 15.56 |
| PGSC0003DMT400047228 | Potato | nucleus | 28.29 | 15.14 |
| PGSC0003DMT400025041 | Potato | cytosol | 30.92 | 15.06 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400079089 | EnsemblPlantsGene:PGSC0003DMG400030779 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF14 | PFAM:PF04720 |
| PGSC:PGSC0003DMG400030779 | TIGRFAMs:TIGR01615 | UniParc:UPI00029573EA | UniProt:M1D174 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400030779]
Coordinates
chr6:+:41048406..41049562
Molecular Weight (calculated)
17505.2 Da
IEP (calculated)
8.817
GRAVY (calculated)
-0.338
Length
152 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNNMEPKKL RQWIVNRLRM DEYEASLCKT SWITSSGSPS GDYEYIDVMM KEISNGSERV RLIVDIDFRS QFELARPTQE YQELLNSLPS IFVGTEDKLN
101: GIISLLCSAA KQSLKEKGLH VPPWRKASYM HSKWLSHNCK KIALFAPTLH IV
101: GIISLLCSAA KQSLKEKGLH VPPWRKASYM HSKWLSHNCK KIALFAPTLH IV
001: MMKIQPINND LPANRVESST KPVLKSRLKR LLDRPFTRIS NSEKLLISGD GVVAGTEFEP SLAKMVQNYM EENNDKQTKN GRNTHRCNCF NGNNDISDDE
101: LDFFDYDNFK SLIQCGSFVE KSLLVEATKI IEKNKSVKRK DELRKIVVDE LSSLGYDSSI CKSKWDKTRS IPAGEYEYID VIVNGERLII DIDFRSEFEI
201: ARQTSGYKEL LQSLPLIFVG KSDRIRQIVS IVSEASKQSL KKKGMHFPPW RKADYMRAKW LSSYTRNSGE KKPTVTSAAK VVAEPELDSS EIELIFEEKV
301: LLPPLKSPIT SVGRDDDDVA ESVKKEAKVV TGLALLFKEN H
101: LDFFDYDNFK SLIQCGSFVE KSLLVEATKI IEKNKSVKRK DELRKIVVDE LSSLGYDSSI CKSKWDKTRS IPAGEYEYID VIVNGERLII DIDFRSEFEI
201: ARQTSGYKEL LQSLPLIFVG KSDRIRQIVS IVSEASKQSL KKKGMHFPPW RKADYMRAKW LSSYTRNSGE KKPTVTSAAK VVAEPELDSS EIELIFEEKV
301: LLPPLKSPIT SVGRDDDDVA ESVKKEAKVV TGLALLFKEN H
Arabidopsis Description
Uncharacterized protein At4g14620 [Source:UniProtKB/TrEMBL;Acc:Q8L7H9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.