Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G409700.1 | Wheat | cytosol | 95.83 | 95.04 |
| TraesCS3D01G404300.1 | Wheat | nucleus | 93.75 | 91.46 |
| HORVU3Hr1G091440.2 | Barley | cytosol | 90.0 | 88.89 |
| Zm00001d042631_P001 | Maize | cytosol | 51.67 | 58.22 |
| Os01t0879600-00 | Rice | plastid | 67.92 | 53.97 |
| OQU87982 | Sorghum | cytosol | 60.83 | 51.96 |
| GSMUA_Achr7P03040_001 | Banana | nucleus | 47.08 | 43.63 |
| PGSC0003DMT400079089 | Potato | cytosol | 26.67 | 42.11 |
| Solyc06g054640.1.1 | Tomato | cytosol | 30.42 | 32.88 |
| KRH43403 | Soybean | cytosol | 35.42 | 32.08 |
| VIT_04s0044g00970.t01 | Wine grape | cytosol | 35.0 | 31.0 |
| KRH59552 | Soybean | cytosol | 33.75 | 29.78 |
| VIT_18s0001g15610.t01 | Wine grape | cytosol | 33.33 | 28.99 |
| CDX87538 | Canola | nucleus | 28.33 | 26.46 |
| Bra015689.1-P | Field mustard | nucleus | 28.33 | 26.46 |
| CDX88346 | Canola | nucleus | 27.92 | 26.07 |
| AT1G77145.1 | Thale cress | cytosol | 27.08 | 25.0 |
| CDX87539 | Canola | nucleus | 27.5 | 24.63 |
| Bra015690.1-P | Field mustard | nucleus | 27.5 | 24.63 |
| AT1G77160.1 | Thale cress | cytosol | 26.67 | 24.33 |
| CDX88344 | Canola | cytosol | 26.25 | 23.77 |
| Bra015691.1-P | Field mustard | cytosol | 25.42 | 23.19 |
| CDX87540 | Canola | cytosol | 25.42 | 23.19 |
| CDX88345 | Canola | nucleus | 25.42 | 22.76 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 26.25 | 22.03 |
| TraesCS4B01G278500.1 | Wheat | peroxisome, plastid | 28.33 | 21.86 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 25.42 | 21.18 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 24.58 | 21.15 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 24.58 | 19.73 |
| TraesCS5B01G442200.1 | Wheat | plastid | 29.17 | 18.67 |
| TraesCS3B01G600900.1 | Wheat | plastid | 24.58 | 16.91 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G442800.1 | EnsemblPlantsGene:TraesCS3B01G442800 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF14 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:683106564..683108456
Molecular Weight (calculated)
26372.2 Da
IEP (calculated)
7.548
GRAVY (calculated)
-0.511
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTSSDERMF EMDAEPASPT ESAPTQHQTT CHIIEGVLGG CTPLEMEIYE RAMEHVREMG EGRKRSSLKK GLMVRLRKDG YDASLCRSSW VATTQHPGGD
101: HEYIDVRVAG DGGAGRTRLI VDIDFRSQFQ LARPAPWYAH LSAQLPAVFV GPPDRLRKAV ALLCLASRRS LRESGLDVPP WRRSSYMQAK WFPSPAPLPD
201: GDAAVAQQSQ WSVAKPGAAG SRRSGLSMEM DGQDASSWAQ
101: HEYIDVRVAG DGGAGRTRLI VDIDFRSQFQ LARPAPWYAH LSAQLPAVFV GPPDRLRKAV ALLCLASRRS LRESGLDVPP WRRSSYMQAK WFPSPAPLPD
201: GDAAVAQQSQ WSVAKPGAAG SRRSGLSMEM DGQDASSWAQ
001: MVEIQGRFKR IESAFNVAAA RVHPPCDNSS GSDHSPDLSD LVASFIEKEG QIVLREEEET SSDDNNLEDV NERLRKLLEG LSCGEERMRI LSATMEVAGT
101: FVGDISSSKR HLMAFLRNKG FDAGLCKSSW ERFGKNTGGK YEYVDVRCGG DYNNRYFVET NLAGEFEIAR PTKRYLSILS QVPRVFVGTS EELKLLVRIM
201: CHEMRRSMKH VGIHVPPWRR NGYMQAKWFG FYKRTSTTNN YEMVNTYDTT AFKGCKEEFW EAKGLKVMVG QLSIAFNISA VEV
101: FVGDISSSKR HLMAFLRNKG FDAGLCKSSW ERFGKNTGGK YEYVDVRCGG DYNNRYFVET NLAGEFEIAR PTKRYLSILS QVPRVFVGTS EELKLLVRIM
201: CHEMRRSMKH VGIHVPPWRR NGYMQAKWFG FYKRTSTTNN YEMVNTYDTT AFKGCKEEFW EAKGLKVMVG QLSIAFNISA VEV
Arabidopsis Description
DUF506 family protein (DUF506) [Source:UniProtKB/TrEMBL;Acc:O48807]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.