Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G341700.1 | Wheat | cytosol | 94.76 | 93.45 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 94.41 | 92.78 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 88.11 | 89.68 |
| EES19824 | Sorghum | cytosol | 69.93 | 66.45 |
| Os05t0519300-01 | Rice | cytosol | 69.93 | 65.36 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 60.49 | 62.01 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 45.45 | 45.3 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 42.66 | 43.88 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 41.61 | 43.43 |
| CDY29898 | Canola | nucleus | 38.81 | 37.63 |
| Bra024209.1-P | Field mustard | nucleus | 38.81 | 37.63 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 40.21 | 37.22 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 39.16 | 36.96 |
| CDX92863 | Canola | nucleus | 37.41 | 36.27 |
| KRH25597 | Soybean | nucleus | 36.01 | 35.89 |
| CDY18979 | Canola | nucleus | 37.41 | 35.79 |
| CDY05782 | Canola | nucleus | 37.06 | 35.69 |
| AT4G32480.1 | Thale cress | nucleus | 35.66 | 35.54 |
| CDY13861 | Canola | nucleus | 36.36 | 35.14 |
| CDX81975 | Canola | nucleus | 36.36 | 35.14 |
| CDY49659 | Canola | nucleus | 36.71 | 35.12 |
| Bra026262.1-P | Field mustard | nucleus | 36.71 | 35.12 |
| PGSC0003DMT400076442 | Potato | nucleus | 37.06 | 35.1 |
| Bra031136.1-P | Field mustard | nucleus | 36.01 | 35.03 |
| CDY31947 | Canola | nucleus | 36.36 | 35.02 |
| Bra036492.1-P | Field mustard | nucleus | 36.36 | 35.02 |
| KRH10888 | Soybean | mitochondrion | 36.71 | 35.0 |
| AT2G20670.1 | Thale cress | nucleus | 34.97 | 34.01 |
| KRH21430 | Soybean | mitochondrion, nucleus | 35.66 | 33.77 |
| Solyc02g078150.2.1 | Tomato | nucleus | 36.36 | 33.77 |
| KRH50053 | Soybean | mitochondrion | 36.36 | 32.3 |
| PGSC0003DMT400047228 | Potato | nucleus | 31.47 | 31.69 |
| Solyc03g006410.2.1 | Tomato | cytosol | 33.57 | 31.58 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 33.57 | 31.37 |
| KRH20449 | Soybean | mitochondrion | 36.01 | 31.31 |
| Solyc02g078160.2.1 | Tomato | nucleus | 31.47 | 29.8 |
| Solyc07g053900.2.1 | Tomato | cytosol | 31.82 | 28.44 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 27.27 | 27.08 |
| TraesCS3B01G442800.1 | Wheat | cytosol | 22.03 | 26.25 |
| TraesCS4B01G278500.1 | Wheat | peroxisome, plastid | 26.57 | 24.44 |
| TraesCS5B01G442200.1 | Wheat | plastid | 30.42 | 23.2 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 23.08 | 22.07 |
| TraesCS3B01G600900.1 | Wheat | plastid | 21.33 | 17.48 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G352000.1 | EnsemblPlantsGene:TraesCS1B01G352000 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF7 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:582911584..582912563
Molecular Weight (calculated)
30286.5 Da
IEP (calculated)
7.315
GRAVY (calculated)
-0.327
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVAEAGDEM SLSNMVLGFY EEADRERWPE DETSVGDGDC SDDERAGGGA AAESSAFWAE QLSHLHEVLG KTSAAESRIR ADTEEAVRQA RSATAAAGVC
101: SCATRATAGG GCRGCTLRSV AGRLRDAGYD SAVCRSRWAR SPEFPAGEHS YVDVVVPTRS GRAMRVVVEP SFRAEFAMAR GGAGYGALVA ALPEAFVGRA
201: EKPRAVVGAM CAAAKRCARE SSLHMAPWRK RRYMEAKWLG TPDRLSPAAG AGSPVAAGSP ESEKQRRFRA SMLTLDYGGR TAVEVA
101: SCATRATAGG GCRGCTLRSV AGRLRDAGYD SAVCRSRWAR SPEFPAGEHS YVDVVVPTRS GRAMRVVVEP SFRAEFAMAR GGAGYGALVA ALPEAFVGRA
201: EKPRAVVGAM CAAAKRCARE SSLHMAPWRK RRYMEAKWLG TPDRLSPAAG AGSPVAAGSP ESEKQRRFRA SMLTLDYGGR TAVEVA
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.