Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29898 | Canola | nucleus | 83.62 | 81.36 |
| CDX92863 | Canola | nucleus | 83.62 | 81.36 |
| Bra024209.1-P | Field mustard | nucleus | 83.62 | 81.36 |
| CDY18979 | Canola | nucleus | 80.84 | 77.59 |
| CDY49659 | Canola | nucleus | 80.14 | 76.92 |
| Bra026262.1-P | Field mustard | nucleus | 80.14 | 76.92 |
| AT2G20670.1 | Thale cress | nucleus | 75.61 | 73.81 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 54.01 | 51.16 |
| KRH25597 | Soybean | nucleus | 47.39 | 47.39 |
| PGSC0003DMT400047228 | Potato | nucleus | 43.9 | 44.37 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 43.9 | 43.9 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 41.81 | 43.17 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 40.07 | 41.97 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 37.98 | 41.6 |
| Solyc07g053900.2.1 | Tomato | cytosol | 45.3 | 40.62 |
| Zm00001d043444_P001 | Maize | nucleus | 39.72 | 40.14 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 38.68 | 39.78 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 38.33 | 39.71 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 38.33 | 39.43 |
| EES01469 | Sorghum | nucleus | 38.68 | 39.36 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 35.54 | 36.3 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 36.24 | 35.86 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 35.54 | 35.66 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 35.89 | 35.4 |
| EES19824 | Sorghum | cytosol | 35.19 | 33.55 |
| Os05t0519300-01 | Rice | cytosol | 34.84 | 32.68 |
| AT3G25240.1 | Thale cress | cytosol | 24.04 | 24.56 |
| AT1G77145.1 | Thale cress | cytosol | 19.86 | 21.92 |
| AT1G77160.1 | Thale cress | cytosol | 19.51 | 21.29 |
| AT1G12030.1 | Thale cress | mitochondrion | 21.6 | 21.02 |
| AT1G62420.1 | Thale cress | cytosol | 20.21 | 20.49 |
| AT3G07350.1 | Thale cress | nucleus | 21.25 | 20.47 |
| AT3G54550.1 | Thale cress | plastid | 20.21 | 20.14 |
| AT4G14620.1 | Thale cress | cytosol | 22.3 | 18.77 |
| AT2G38820.2 | Thale cress | cytosol | 19.86 | 18.39 |
| AT2G39650.1 | Thale cress | cytosol | 18.47 | 18.21 |
| AT3G22970.1 | Thale cress | plastid | 20.91 | 16.22 |
Protein Annotations
| MapMan:35.2 | EntrezGene:829383 | ProteinID:AEE86067.1 | ArrayExpress:AT4G32480 | EnsemblPlantsGene:AT4G32480 | RefSeq:AT4G32480 |
| TAIR:AT4G32480 | RefSeq:AT4G32480-TAIR-G | EnsemblPlants:AT4G32480.1 | TAIR:AT4G32480.1 | EMBL:AY052287 | EMBL:AY061919 |
| ProteinID:CAA22575.1 | ProteinID:CAB79965.1 | RefSeq:NP_194974.1 | InterPro:PDDEXK-like | PFAM:PF04720 | PO:PO:0000005 |
| PO:PO:0000293 | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF33 | UniProt:Q9SUU4 | TIGRFAMs:TIGR01615 | UniParc:UPI000009D816 |
Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
Coordinates
chr4:+:15676240..15677977
Molecular Weight (calculated)
32595.1 Da
IEP (calculated)
7.656
GRAVY (calculated)
-0.500
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.