Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | EES01073 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | EES02247 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | OQU78515 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043444_P001 | Maize | nucleus | 89.72 | 89.08 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 73.4 | 74.73 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 69.15 | 74.43 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 72.69 | 73.48 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 72.34 | 73.12 |
| EES19824 | Sorghum | cytosol | 63.12 | 59.14 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 53.55 | 52.61 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 50.0 | 51.46 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 48.94 | 49.64 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 47.52 | 44.22 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 48.23 | 44.01 |
| KRH25597 | Soybean | nucleus | 43.62 | 42.86 |
| KRH10888 | Soybean | mitochondrion | 43.97 | 41.33 |
| CDY29898 | Canola | nucleus | 42.55 | 40.68 |
| Bra024209.1-P | Field mustard | nucleus | 42.55 | 40.68 |
| CDY18979 | Canola | nucleus | 42.91 | 40.47 |
| CDX81975 | Canola | nucleus | 41.49 | 39.53 |
| CDY49659 | Canola | nucleus | 41.84 | 39.46 |
| Bra026262.1-P | Field mustard | nucleus | 41.84 | 39.46 |
| CDY05782 | Canola | nucleus | 41.49 | 39.39 |
| Bra036492.1-P | Field mustard | nucleus | 41.49 | 39.39 |
| CDX92863 | Canola | nucleus | 41.13 | 39.32 |
| CDY13861 | Canola | nucleus | 41.13 | 39.19 |
| PGSC0003DMT400076442 | Potato | nucleus | 41.84 | 39.07 |
| KRH21430 | Soybean | mitochondrion, nucleus | 41.84 | 39.07 |
| Bra031136.1-P | Field mustard | nucleus | 40.43 | 38.78 |
| PGSC0003DMT400047228 | Potato | nucleus | 39.01 | 38.73 |
| CDY31947 | Canola | nucleus | 40.78 | 38.72 |
| AT4G32480.1 | Thale cress | nucleus | 39.36 | 38.68 |
| Solyc02g078150.2.1 | Tomato | nucleus | 41.49 | 37.99 |
| KRH20449 | Soybean | mitochondrion | 43.97 | 37.69 |
| KRH50053 | Soybean | mitochondrion | 42.91 | 37.58 |
| Solyc03g006410.2.1 | Tomato | cytosol | 40.07 | 37.17 |
| AT2G20670.1 | Thale cress | nucleus | 38.3 | 36.73 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 39.72 | 36.6 |
| Solyc02g078160.2.1 | Tomato | nucleus | 38.65 | 36.09 |
| Solyc07g053900.2.1 | Tomato | cytosol | 39.01 | 34.38 |
| EER95459 | Sorghum | plastid | 28.72 | 27.09 |
| EER91615 | Sorghum | mitochondrion | 28.01 | 26.96 |
| EES07354 | Sorghum | cytosol | 26.24 | 23.95 |
| EES04096 | Sorghum | cytosol | 24.82 | 23.65 |
| EER93295 | Sorghum | plastid | 30.5 | 21.88 |
| OQU87982 | Sorghum | cytosol | 21.28 | 21.35 |
| EER98072 | Sorghum | cytosol, plastid | 30.85 | 18.35 |
Protein Annotations
| EnsemblPlants:EES01469 | EnsemblPlantsGene:SORBI_3003G293900 | EntrezGene:8075566 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF7 |
| PFAM:PF04720 | ProteinID:EES01469 | ProteinID:EES01469.1 | RefSeq:XP_002456349.1 | SEG:seg | TIGRFAMs:TIGR01615 |
| unigene:Sbi.11281 | UniParc:UPI0001A849A9 | UniProt:C5XK19 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr3:+:62646907..62648863
Molecular Weight (calculated)
31058.9 Da
IEP (calculated)
8.070
GRAVY (calculated)
-0.413
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMEEAVDGE MSLSNMVLGF MEDFERDHQR RLENDDDDDE GSSGGDTAES KAFWQTQHSQ LHEALAKTSP AESRIRADTE EAVKSMRAAA ACSCTGRGRP
101: AARDCRLCML RHVADRLRDA GYNSALCKSK WTRSPDIPSG EHSYVEVVVQ TRSGKAVRVV VELSFRAEFE VARASAGYRA LVTALPEAFV GRADRLRGVV
201: KVMCAAAKQC MKENNMHMGP WRKHKYMQAK WLGTPERTAP AAVAATPVVV PSVTVVGSPE KQTKFRASML TFDFGRNAVE VA
101: AARDCRLCML RHVADRLRDA GYNSALCKSK WTRSPDIPSG EHSYVEVVVQ TRSGKAVRVV VELSFRAEFE VARASAGYRA LVTALPEAFV GRADRLRGVV
201: KVMCAAAKQC MKENNMHMGP WRKHKYMQAK WLGTPERTAP AAVAATPVVV PSVTVVGSPE KQTKFRASML TFDFGRNAVE VA
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.