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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • plastid 4
  • mitochondrion 2
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
EES19518

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G22970.1 EES19518 AT4G15560.1 24104567
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d034444_P002 Maize plastid 89.31 86.67
TraesCS5B01G442200.1 Wheat plastid 73.03 76.53
TraesCS5A01G439200.1 Wheat plastid 72.52 76.0
TraesCS5D01G446400.1 Wheat plastid 73.54 75.85
Os03t0796600-01 Rice cytosol, nucleus, plastid 77.61 75.31
HORVU5Hr1G105950.2 Barley plastid 72.01 69.53
GSMUA_Achr4P21100_001 Banana cytosol, plastid 45.55 49.86
EER98072 Sorghum cytosol, plastid 60.05 49.79
GSMUA_Achr8P20590_001 Banana plastid 44.27 47.93
GSMUA_Achr9P10660_001 Banana cytosol, plastid 45.55 46.86
EER95459 Sorghum plastid 34.61 45.48
EER91615 Sorghum mitochondrion 32.57 43.69
GSMUA_Achr9P25590_001 Banana plastid 44.53 43.0
VIT_05s0020g04500.t01 Wine grape nucleus 41.73 42.49
CDX92970 Canola cytosol 35.11 41.44
Bra001897.1-P Field mustard cytosol 35.11 41.44
Bra036877.1-P Field mustard cytosol, plastid 36.39 40.4
CDY16266 Canola nucleus 36.64 40.34
AT2G38820.2 Thale cress cytosol 31.81 40.32
PGSC0003DMT400041951 Potato cytosol 37.91 40.27
CDY29750 Canola nucleus, plastid 36.13 40.11
KRH34359 Soybean plastid 38.93 39.53
AT4G14620.1 Thale cress cytosol 34.1 39.3
CDX94877 Canola cytosol 34.61 39.19
KRH71351 Soybean cytosol 35.62 39.0
KRG92439 Soybean plastid 38.93 38.93
KRH69065 Soybean cytosol 36.13 38.8
KRH32089 Soybean cytosol 33.33 38.64
KRG95606 Soybean cytosol 35.37 38.5
Solyc09g082980.2.1 Tomato nucleus 38.93 38.44
VIT_00s0179g00360.t01 Wine grape cytosol 38.68 38.29
PGSC0003DMT400015576 Potato cytosol, plastid 38.42 38.13
CDY18366 Canola cytosol 29.01 38.0
Bra033896.1-P Field mustard cytosol 35.37 37.87
AT3G22970.1 Thale cress plastid 35.62 37.84
CDY10330 Canola cytosol 35.11 37.7
Bra017099.1-P Field mustard cytosol 28.75 37.67
KRH31637 Soybean cytosol 36.39 37.34
CDX93300 Canola cytosol 28.5 37.33
Solyc06g053910.2.1 Tomato cytosol, plastid 36.39 36.76
Bra000098.1-P Field mustard cytosol 28.75 36.57
CDY07696 Canola cytosol 29.01 36.54
CDY14428 Canola cytosol 28.75 36.33
CDY10329 Canola plastid 33.08 34.39
AT3G54550.1 Thale cress plastid 24.94 34.03
PGSC0003DMT400049773 Potato nucleus 36.13 32.72
Solyc09g065760.2.1 Tomato cytosol, plastid 35.88 32.41
EES01469 Sorghum nucleus 21.88 30.5
EES04096 Sorghum cytosol 22.14 29.39
EES19824 Sorghum cytosol 21.88 28.57
EES07354 Sorghum cytosol 19.34 24.6
OQU87982 Sorghum cytosol 17.56 24.56
Protein Annotations
EnsemblPlants:EER93295EnsemblPlantsGene:SORBI_3001G057100EntrezGene:8081257InterPro:PDDEXK-likePANTHER:PTHR31579PANTHER:PTHR31579:SF19
PFAM:PF04720ProteinID:EER93295ProteinID:EER93295.1RefSeq:XP_002466297.1SEG:segTIGRFAMs:TIGR01615
UniParc:UPI0001A82B4EUniProt:C5WX72MapMan:35.2:::
Description
hypothetical protein
Coordinates
chr1:-:4299495..4301798
Molecular Weight (calculated)
42367.5 Da
IEP (calculated)
8.836
GRAVY (calculated)
-0.421
Length
393 amino acids
Sequence
(BLAST)
001: MPFQLKNGHH HQHHGAAMEG KPPLLPTTQQ QPAPTPRVSR FRRLLVRVSA SEKFVADGKE RDKEEKLAPP PPPAAGDGDA AGSLGLDRMV LSFMEEATAV
101: ERPPRGRCNC FNGSNHEESD EEFDFLPSEY ASKPATAGAG DALEALKGLV QSASVAERNL LADASRLADK CGKGCKGKAE CRRAVADGLR ALGYDASVCK
201: SRWEKAPSYP AGEHEYIDAV VGKEEVRLIV EVDFRSQFEL ARSTKAYRAA LQALPPLFVG TPDRLGQIVA VVAEAARQSL KKKGLHFPPW RKPEYMRAKW
301: LSPHVRCGDK VVVPGPAAPL SAATPVQAAS FSGEFELVFD RKPSRDSAAA EGGVSVGEKI TVVVSPWRPT EEASKKQEQV PKAKVVTGLA AVL
Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)
001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
Arabidopsis Description
At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.