Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 2
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
EES19518 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT3G22970.1 | EES19518 | AT4G15560.1 | 24104567 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d034444_P002 | Maize | plastid | 89.31 | 86.67 |
TraesCS5B01G442200.1 | Wheat | plastid | 73.03 | 76.53 |
TraesCS5A01G439200.1 | Wheat | plastid | 72.52 | 76.0 |
TraesCS5D01G446400.1 | Wheat | plastid | 73.54 | 75.85 |
Os03t0796600-01 | Rice | cytosol, nucleus, plastid | 77.61 | 75.31 |
HORVU5Hr1G105950.2 | Barley | plastid | 72.01 | 69.53 |
GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 45.55 | 49.86 |
EER98072 | Sorghum | cytosol, plastid | 60.05 | 49.79 |
GSMUA_Achr8P20590_001 | Banana | plastid | 44.27 | 47.93 |
GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 45.55 | 46.86 |
EER95459 | Sorghum | plastid | 34.61 | 45.48 |
EER91615 | Sorghum | mitochondrion | 32.57 | 43.69 |
GSMUA_Achr9P25590_001 | Banana | plastid | 44.53 | 43.0 |
VIT_05s0020g04500.t01 | Wine grape | nucleus | 41.73 | 42.49 |
CDX92970 | Canola | cytosol | 35.11 | 41.44 |
Bra001897.1-P | Field mustard | cytosol | 35.11 | 41.44 |
Bra036877.1-P | Field mustard | cytosol, plastid | 36.39 | 40.4 |
CDY16266 | Canola | nucleus | 36.64 | 40.34 |
AT2G38820.2 | Thale cress | cytosol | 31.81 | 40.32 |
PGSC0003DMT400041951 | Potato | cytosol | 37.91 | 40.27 |
CDY29750 | Canola | nucleus, plastid | 36.13 | 40.11 |
KRH34359 | Soybean | plastid | 38.93 | 39.53 |
AT4G14620.1 | Thale cress | cytosol | 34.1 | 39.3 |
CDX94877 | Canola | cytosol | 34.61 | 39.19 |
KRH71351 | Soybean | cytosol | 35.62 | 39.0 |
KRG92439 | Soybean | plastid | 38.93 | 38.93 |
KRH69065 | Soybean | cytosol | 36.13 | 38.8 |
KRH32089 | Soybean | cytosol | 33.33 | 38.64 |
KRG95606 | Soybean | cytosol | 35.37 | 38.5 |
Solyc09g082980.2.1 | Tomato | nucleus | 38.93 | 38.44 |
VIT_00s0179g00360.t01 | Wine grape | cytosol | 38.68 | 38.29 |
PGSC0003DMT400015576 | Potato | cytosol, plastid | 38.42 | 38.13 |
CDY18366 | Canola | cytosol | 29.01 | 38.0 |
Bra033896.1-P | Field mustard | cytosol | 35.37 | 37.87 |
AT3G22970.1 | Thale cress | plastid | 35.62 | 37.84 |
CDY10330 | Canola | cytosol | 35.11 | 37.7 |
Bra017099.1-P | Field mustard | cytosol | 28.75 | 37.67 |
KRH31637 | Soybean | cytosol | 36.39 | 37.34 |
CDX93300 | Canola | cytosol | 28.5 | 37.33 |
Solyc06g053910.2.1 | Tomato | cytosol, plastid | 36.39 | 36.76 |
Bra000098.1-P | Field mustard | cytosol | 28.75 | 36.57 |
CDY07696 | Canola | cytosol | 29.01 | 36.54 |
CDY14428 | Canola | cytosol | 28.75 | 36.33 |
CDY10329 | Canola | plastid | 33.08 | 34.39 |
AT3G54550.1 | Thale cress | plastid | 24.94 | 34.03 |
PGSC0003DMT400049773 | Potato | nucleus | 36.13 | 32.72 |
Solyc09g065760.2.1 | Tomato | cytosol, plastid | 35.88 | 32.41 |
EES01469 | Sorghum | nucleus | 21.88 | 30.5 |
EES04096 | Sorghum | cytosol | 22.14 | 29.39 |
EES19824 | Sorghum | cytosol | 21.88 | 28.57 |
EES07354 | Sorghum | cytosol | 19.34 | 24.6 |
OQU87982 | Sorghum | cytosol | 17.56 | 24.56 |
Protein Annotations
EnsemblPlants:EER93295 | EnsemblPlantsGene:SORBI_3001G057100 | EntrezGene:8081257 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF19 |
PFAM:PF04720 | ProteinID:EER93295 | ProteinID:EER93295.1 | RefSeq:XP_002466297.1 | SEG:seg | TIGRFAMs:TIGR01615 |
UniParc:UPI0001A82B4E | UniProt:C5WX72 | MapMan:35.2 | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:4299495..4301798
Molecular Weight (calculated)
42367.5 Da
IEP (calculated)
8.836
GRAVY (calculated)
-0.421
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MPFQLKNGHH HQHHGAAMEG KPPLLPTTQQ QPAPTPRVSR FRRLLVRVSA SEKFVADGKE RDKEEKLAPP PPPAAGDGDA AGSLGLDRMV LSFMEEATAV
101: ERPPRGRCNC FNGSNHEESD EEFDFLPSEY ASKPATAGAG DALEALKGLV QSASVAERNL LADASRLADK CGKGCKGKAE CRRAVADGLR ALGYDASVCK
201: SRWEKAPSYP AGEHEYIDAV VGKEEVRLIV EVDFRSQFEL ARSTKAYRAA LQALPPLFVG TPDRLGQIVA VVAEAARQSL KKKGLHFPPW RKPEYMRAKW
301: LSPHVRCGDK VVVPGPAAPL SAATPVQAAS FSGEFELVFD RKPSRDSAAA EGGVSVGEKI TVVVSPWRPT EEASKKQEQV PKAKVVTGLA AVL
101: ERPPRGRCNC FNGSNHEESD EEFDFLPSEY ASKPATAGAG DALEALKGLV QSASVAERNL LADASRLADK CGKGCKGKAE CRRAVADGLR ALGYDASVCK
201: SRWEKAPSYP AGEHEYIDAV VGKEEVRLIV EVDFRSQFEL ARSTKAYRAA LQALPPLFVG TPDRLGQIVA VVAEAARQSL KKKGLHFPPW RKPEYMRAKW
301: LSPHVRCGDK VVVPGPAAPL SAATPVQAAS FSGEFELVFD RKPSRDSAAA EGGVSVGEKI TVVVSPWRPT EEASKKQEQV PKAKVVTGLA AVL
001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP
Arabidopsis Description
At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.