CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90583
CDY09752
CDY52177
CDY64791

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	CDX90583	AT4G15560.1	24104567
AT3G22970.1	CDY09752	AT4G15560.1	24104567
AT3G22970.1	CDY52177	AT4G15560.1	24104567
AT3G22970.1	CDY64791	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001897.1-P	Field mustard	cytosol	99.7	99.7
CDX94877	Canola	cytosol	94.89	91.07
CDY10330	Canola	cytosol	81.38	74.04
AT3G22970.1	Thale cress	plastid	80.78	72.7
CDY10329	Canola	plastid	78.08	68.78
CDY29750	Canola	nucleus, plastid	65.77	61.86
CDY16266	Canola	nucleus	66.07	61.62
KRH34359	Soybean	plastid	63.06	54.26
KRG92439	Soybean	plastid	63.36	53.69
VIT_05s0020g04500.t01	Wine grape	nucleus	60.96	52.59
KRH69065	Soybean	cytosol	56.16	51.09
KRH31637	Soybean	cytosol	57.66	50.13
GSMUA_Achr3P15230_001	Banana	cytosol	50.15	49.55
PGSC0003DMT400041951	Potato	cytosol	54.05	48.65
CDX93300	Canola	cytosol	43.54	48.33
CDY18366	Canola	cytosol	43.24	48.0
Solyc09g082980.2.1	Tomato	nucleus	57.36	47.99
PGSC0003DMT400015576	Potato	cytosol, plastid	57.06	47.98
CDY07696	Canola	cytosol	44.44	47.44
CDY14428	Canola	cytosol	43.84	46.95
Solyc06g053910.2.1	Tomato	cytosol, plastid	54.05	46.27
GSMUA_Achr8P26930_001	Banana	cytosol	48.95	46.18
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	49.25	45.68
GSMUA_Achr4P14880_001	Banana	mitochondrion	36.04	45.45
GSMUA_Achr8P20590_001	Banana	plastid	47.75	43.8
GSMUA_Achr8P04470_001	Banana	cytosol	48.35	43.75
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	48.05	41.88
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	36.34	40.33
EER91615	Sorghum	mitochondrion	35.44	40.27
Os10t0417800-01	Rice	plastid	36.34	40.2
EER95459	Sorghum	plastid	35.14	39.13
GSMUA_Achr9P25590_001	Banana	plastid	47.45	38.82
Os03t0162500-01	Rice	plastid	35.74	38.76
Zm00001d027763_P001	Maize	plastid	34.23	38.0
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	34.83	37.3
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	34.83	37.3
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	35.14	37.14
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	34.53	36.51
TraesCS5B01G442200.1	Wheat	plastid	40.54	36.0
TraesCS5A01G439200.1	Wheat	plastid	39.94	35.47
EER93295	Sorghum	plastid	41.44	35.11
TraesCS5D01G446400.1	Wheat	plastid	39.94	34.91
Zm00001d034444_P002	Maize	plastid	41.74	34.32
Zm00001d018962_P001	Maize	mitochondrion, plastid	39.04	33.94
Os03t0796600-01	Rice	cytosol, nucleus, plastid	40.54	33.33
HORVU5Hr1G105950.2	Barley	plastid	39.94	32.68
Zm00001d007820_P002	Maize	plastid	37.84	31.42
CDY35924	Canola	nucleus	24.62	27.33
EER98072	Sorghum	cytosol, plastid	38.44	27.0
CDY60822	Canola	nucleus	24.02	26.76
CDY28060	Canola	cytosol, nucleus, plastid	24.02	26.67
CDY15101	Canola	nucleus	22.22	26.62
CDY52283	Canola	nucleus	22.52	26.6
CDY34904	Canola	nucleus	24.02	26.49
CDX87539	Canola	nucleus	20.72	25.75
CDY07644	Canola	cytosol	23.12	25.58
CDX87540	Canola	cytosol	20.12	25.48
CDX88345	Canola	nucleus	20.42	25.37
CDX88346	Canola	nucleus	19.52	25.29
CDX88344	Canola	cytosol	20.12	25.28
CDY24955	Canola	cytosol	22.52	24.83
CDX87538	Canola	nucleus	18.92	24.51
CDY53353	Canola	mitochondrion	20.72	23.55
CDY30048	Canola	mitochondrion	20.72	23.39
CDY21027	Canola	cytosol	19.82	22.37
CDX81975	Canola	nucleus	19.52	21.96
CDY13861	Canola	nucleus	19.52	21.96
CDY31234	Canola	cytosol	19.22	21.77
CDY29898	Canola	nucleus	19.22	21.69
CDY31947	Canola	nucleus	18.92	21.21
CDY05782	Canola	nucleus	18.92	21.21
CDX92863	Canola	nucleus	18.62	21.02
CDY18979	Canola	nucleus	18.32	20.4
CDY49659	Canola	nucleus	18.32	20.4

Protein Annotations

EnsemblPlants:CDX92970	EnsemblPlantsGene:GSBRNA2T00154847001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19	PFAM:PF04720
ProteinID:CDX92970	ProteinID:CDX92970.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0004EEA716	MapMan:35.2

Description

BnaA03g36920D

Coordinates

chrLK031874:+:361565..362844

Molecular Weight (calculated)

36901.9 Da

IEP (calculated)

5.371

GRAVY (calculated)

-0.365

Length

333 amino acids

Sequence
(BLAST)

001: MPFTMKIQPI DIDSPAVAKP VLKSRLKRLF DRPFRTATSE KPFTGGEAQS ATEFEPSSVC LTKMVQNFIE ENNEKQAKCG RNRCNCFNGS NNDSSDDDDS
101: DLFASDHLKS LIPCATVAES NLLADVAKIV DKNNKSVKRK EEMRKMVNEG LLSLHYDSSI CKSKWDKSPS FPAGEYEYID VIVGEERLLI EVDFRSEFDI
201: ARQTSGYKAL LQSLPFVFVG KSDRLSQIVA LISEAAKVSM KKRGMHLPPW RKAEYMRSKW MSSYARASGN AEELPLAAAA AEMEVDCEEI ELVFEEKSLS
301: PVVVKASSSV DGDGADAAVK AVTGLALLFK EKP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.