Factsheet for GSMUA_Achr8P04470_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P24940_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	GSMUA_Achr10P...	AT4G15560.1	24104567
AT3G22970.1	GSMUA_Achr3P24940_001	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P15230_001	Banana	cytosol	72.83	79.53
GSMUA_Achr8P26930_001	Banana	cytosol	71.74	74.79
GSMUA_Achr4P14880_001	Banana	mitochondrion	46.2	64.39
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	54.62	55.99
GSMUA_Achr8P20590_001	Banana	plastid	50.82	51.52
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	51.36	49.48
CDY18366	Canola	cytosol	39.67	48.67
Bra001897.1-P	Field mustard	cytosol	43.75	48.35
CDX92970	Canola	cytosol	43.75	48.35
Bra017099.1-P	Field mustard	cytosol	39.4	48.33
CDX93300	Canola	cytosol	39.13	48.0
KRH71351	Soybean	cytosol	46.74	47.91
VIT_05s0020g04500.t01	Wine grape	nucleus	50.0	47.67
Bra000098.1-P	Field mustard	cytosol	39.95	47.57
CDY14428	Canola	cytosol	39.95	47.27
KRH32089	Soybean	cytosol	43.48	47.2
CDY07696	Canola	cytosol	39.95	47.12
AT2G38820.2	Thale cress	cytosol	39.67	47.1
CDY29750	Canola	nucleus, plastid	45.11	46.89
KRH34359	Soybean	plastid	49.18	46.77
Bra036877.1-P	Field mustard	cytosol, plastid	44.84	46.61
KRG92439	Soybean	plastid	49.46	46.31
CDY16266	Canola	nucleus	44.84	46.22
CDX94877	Canola	cytosol	43.48	46.11
VIT_00s0179g00360.t01	Wine grape	cytosol	49.73	46.1
PGSC0003DMT400015576	Potato	cytosol, plastid	49.46	45.96
PGSC0003DMT400041951	Potato	cytosol	46.2	45.95
Bra033896.1-P	Field mustard	cytosol	45.65	45.78
KRG95606	Soybean	cytosol	44.84	45.71
AT3G22970.1	Thale cress	plastid	45.92	45.68
GSMUA_Achr9P25590_001	Banana	plastid	50.27	45.45
Solyc09g082980.2.1	Tomato	nucleus	48.91	45.23
AT4G14620.1	Thale cress	cytosol	41.85	45.16
CDY10330	Canola	cytosol	44.29	44.54
AT3G54550.1	Thale cress	plastid	33.97	43.4
Solyc06g053910.2.1	Tomato	cytosol, plastid	45.38	42.93
CDY10329	Canola	plastid	42.66	41.53
KRH69065	Soybean	cytosol	41.3	41.53
KRH31637	Soybean	cytosol	42.93	41.25
Solyc09g065760.2.1	Tomato	cytosol, plastid	44.57	37.7
PGSC0003DMT400049773	Potato	nucleus	43.75	37.1
GSMUA_Achr7P03040_001	Banana	nucleus	20.11	28.57
GSMUA_Achr6P21070_001	Banana	cytosol	22.83	28.19
GSMUA_Achr7P24960_001	Banana	cytosol	19.57	26.28
GSMUA_Achr4P02600_001	Banana	nucleus	19.84	26.26
GSMUA_Achr3P03980_001	Banana	cytosol	20.38	26.13
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	14.4	25.48
GSMUA_Achr3P31780_001	Banana	cytosol	19.84	25.44
GSMUA_Achr10P...	Banana	mitochondrion	23.1	24.43
GSMUA_Achr5P07100_001	Banana	cytosol	23.1	16.44

Protein Annotations

EnsemblPlants:GSMUA_Achr8P04470_001	EnsemblPlants:GSMUA_Achr8T04470_001	EnsemblPlantsGene:GSMUA_Achr8G04470_001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002966B67	UniProt:M0TMK0	MapMan:35.2

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_179.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G04470_001]

Coordinates

chr8:-:2967303..2968740

Molecular Weight (calculated)

40384.6 Da

IEP (calculated)

7.142

GRAVY (calculated)

-0.497

Length

368 amino acids

Sequence
(BLAST)

001: MPFPTKIQPI DVRGLVRSDQ AKPVPKSRLK RLFERQFPGV LRISSVERLD LEPSSVCLDK MVRSFMEDNN GEKPSSRCGH SRCNCFHGHC DDSSDDDLDF
101: ISSSNSGDAP IVSAAEVIKG LVVCTTVSER NLLADASTVV ERSKNFKRKN EHMKAVTDGL RSLGYDASLC KSRWEKTASI PAGEHEYIDV IIVGERLLLD
201: VDFRSEFQIA RSTKSYAAVL QSLPSVFVGK EDRVSQIVAV VSEAARLSLK KKGLYFPPWR KPEYIRSKWL APYERSTTPA DHEQAAEAVE ETRASEEKAK
301: TENPRGDAST TDEPGEAEGK SAVAAEGKST VAAASAPPTW ELPEVKPRTP HKGAKVVTGL ASVLSENP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.