Factsheet for Bra001897.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012779.1-P
Bra033495.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22970.1	Bra012779.1-P	AT4G15560.1	24104567
AT3G22970.1	Bra033495.1-P	AT4G15560.1	24104567

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92970	Canola	cytosol	99.7	99.7
Bra033896.1-P	Field mustard	cytosol	82.88	75.2
AT3G22970.1	Thale cress	plastid	81.08	72.97
Bra036877.1-P	Field mustard	cytosol, plastid	65.77	61.86
KRH34359	Soybean	plastid	63.36	54.52
KRG92439	Soybean	plastid	63.66	53.94
VIT_05s0020g04500.t01	Wine grape	nucleus	61.26	52.85
KRH69065	Soybean	cytosol	56.16	51.09
KRH31637	Soybean	cytosol	57.66	50.13
GSMUA_Achr3P15230_001	Banana	cytosol	50.15	49.55
PGSC0003DMT400041951	Potato	cytosol	54.35	48.92
Solyc09g082980.2.1	Tomato	nucleus	57.36	47.99
PGSC0003DMT400015576	Potato	cytosol, plastid	57.06	47.98
Bra017099.1-P	Field mustard	cytosol	42.94	47.67
Bra000098.1-P	Field mustard	cytosol	44.14	47.57
Solyc06g053910.2.1	Tomato	cytosol, plastid	54.35	46.53
GSMUA_Achr8P26930_001	Banana	cytosol	48.95	46.18
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	49.25	45.68
GSMUA_Achr4P14880_001	Banana	mitochondrion	36.04	45.45
GSMUA_Achr8P20590_001	Banana	plastid	47.75	43.8
GSMUA_Achr8P04470_001	Banana	cytosol	48.35	43.75
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	48.05	41.88
Zm00001d032955_P001	Maize	cytosol, mitochondrion, nucleus, plastid	36.34	40.33
EER91615	Sorghum	mitochondrion	35.44	40.27
Os10t0417800-01	Rice	plastid	36.34	40.2
EER95459	Sorghum	plastid	35.14	39.13
GSMUA_Achr9P25590_001	Banana	plastid	47.45	38.82
Os03t0162500-01	Rice	plastid	35.74	38.76
Zm00001d027763_P001	Maize	plastid	34.23	38.0
TraesCS4B01G278500.1	Wheat	peroxisome, plastid	34.83	37.3
TraesCS4D01G277000.1	Wheat	peroxisome, plastid	34.83	37.3
TraesCS4A01G025500.1	Wheat	peroxisome, plastid	35.14	37.14
HORVU4Hr1G073730.1	Barley	peroxisome, plastid	34.53	36.51
TraesCS5B01G442200.1	Wheat	plastid	40.54	36.0
TraesCS5A01G439200.1	Wheat	plastid	39.94	35.47
EER93295	Sorghum	plastid	41.44	35.11
TraesCS5D01G446400.1	Wheat	plastid	39.94	34.91
Zm00001d034444_P002	Maize	plastid	41.74	34.32
Zm00001d018962_P001	Maize	mitochondrion, plastid	39.04	33.94
Os03t0796600-01	Rice	cytosol, nucleus, plastid	40.54	33.33
HORVU5Hr1G105950.2	Barley	plastid	39.94	32.68
Bra040373.1-P	Field mustard	plastid	18.32	31.77
Zm00001d007820_P002	Maize	plastid	37.84	31.42
Bra029641.1-P	Field mustard	nucleus	25.23	28.0
Bra013223.1-P	Field mustard	nucleus	23.12	27.3
EER98072	Sorghum	cytosol, plastid	38.44	27.0
Bra000140.1-P	Field mustard	cytosol	23.42	25.83
Bra015690.1-P	Field mustard	nucleus	20.72	25.75
Bra015691.1-P	Field mustard	cytosol	20.12	25.48
Bra015689.1-P	Field mustard	nucleus	18.92	24.51
Bra019736.1-P	Field mustard	mitochondrion	20.42	23.21
Bra031136.1-P	Field mustard	nucleus	19.82	22.45
Bra016797.1-P	Field mustard	cytosol	19.82	22.37
Bra024209.1-P	Field mustard	nucleus	19.22	21.69
Bra036492.1-P	Field mustard	nucleus	18.92	21.21
Bra026262.1-P	Field mustard	nucleus	18.32	20.4

Protein Annotations

EnsemblPlants:Bra001897.1	EnsemblPlants:Bra001897.1-P	EnsemblPlantsGene:Bra001897	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI000254073D	UniProt:M4CCG7	MapMan:35.2

Description

AT3G22970 (E=7e-119) | unknown protein

Coordinates

chrA03:+:19213110..19214189

Molecular Weight (calculated)

36932.0 Da

IEP (calculated)

5.371

GRAVY (calculated)

-0.372

Length

333 amino acids

Sequence
(BLAST)

001: MPFTMKIQPI DIDSPAVAKP VLKSRLKRLF DRPFRTATSE KPFTGGEAQS ATEFEPSSVC LTKMVQNFIE ENNEKQAKCG RNRCNCFNGS NNDSSDDDDS
101: DLFASDHLKS LIPCATVAES NLLADVAKIV DKNNKSVKRK EEMRKMVNEG LLSLHYDSSI CKSKWDKSPS FPAGEYEYID VIVGEERLLI EVDFRSEFDI
201: ARQTSGYKAL LQSLPFVFVG KSDRLSQIVA LISEAAKVSM KKRGMHLPPW RKAEYMRSKW MSSYTRASGN AEELPLAAAA AEMEVDCEEI ELVFEEKSLS
301: PVVVKASSSV DGDGADAAVK AVTGLALLFK EKP

Best Arabidopsis Sequence Match ( AT3G22970.1 )
(BLAST)

001: MPFTMKIQPI DIDSSPTVAR AESGNKPVLK SRLKRLFDRP FTNVLRNSTT TTTEKPFVVT GGEVQCGGVV TEFEPSSVCL AKMVQNFIEE NNEKQAKCGR
101: NRCNCFNGNN DGSSDDESDL FGGSIDGCDA SDHLKSLIPC TTVGERNLLA DAAKIVDKNK SVKRKDDMKK IVNEGLLSLN YNSSICKSKW DKSPSFPAGE
201: YEYIDVIIGE ERLIIDVDFR SEFDIARQTS GYKVLLQSLP FIFVGKSDRL SQIVFLISEA AKQSLKKKGM PFPPWRKAEY MRSKWLSSYT RASVVVVDET
301: VTVTDVTAAD AAVEKEVDSV EIELVFEEKC LSPRVIVNSS SSPTDGDDDV AVEREVKAVT GLASLFKEKP

Arabidopsis Description

At3g22970 [Source:UniProtKB/TrEMBL;Acc:Q9LIJ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.