Factsheet for Bra000140.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07644	Canola	cytosol	99.01	99.34
AT2G39650.1	Thale cress	cytosol	85.43	88.66
VIT_13s0019g01100.t01	Wine grape	nucleus	52.98	58.82
KRH70457	Soybean	cytosol	53.31	52.27
KRH01670	Soybean	nucleus	51.99	50.97
Os01t0973600-01	Rice	plastid	52.32	46.88
GSMUA_Achr10P...	Banana	mitochondrion	52.32	45.4
Zm00001d041955_P001	Maize	plastid	50.33	44.19
TraesCS3D01G536200.1	Wheat	plastid	49.67	43.35
TraesCS3B01G600900.1	Wheat	plastid	50.0	43.27
TraesCS3A01G530700.1	Wheat	plastid	49.34	43.19
Solyc06g005480.2.1	Tomato	cytosol	44.04	42.63
PGSC0003DMT400025041	Potato	cytosol	43.05	41.67
HORVU3Hr1G115940.1	Barley	plastid	49.67	35.46
Bra040373.1-P	Field mustard	plastid	20.86	32.81
GSMUA_Achr5P07100_001	Banana	cytosol	51.66	30.17
Bra029641.1-P	Field mustard	nucleus	24.83	25.0
Bra017099.1-P	Field mustard	cytosol	24.5	24.67
Bra000098.1-P	Field mustard	cytosol	24.83	24.27
Bra013223.1-P	Field mustard	nucleus	22.19	23.76
Bra001897.1-P	Field mustard	cytosol	25.83	23.42
Bra015689.1-P	Field mustard	nucleus	18.54	21.79
Bra033896.1-P	Field mustard	cytosol	26.16	21.53
Bra024209.1-P	Field mustard	nucleus	20.53	21.02
Bra019736.1-P	Field mustard	mitochondrion	20.2	20.82
Bra026262.1-P	Field mustard	nucleus	20.53	20.74
Bra016797.1-P	Field mustard	cytosol	20.2	20.68
Bra036877.1-P	Field mustard	cytosol, plastid	24.17	20.62
Bra015690.1-P	Field mustard	nucleus	18.21	20.52
Bra031136.1-P	Field mustard	nucleus	19.87	20.41
Bra015691.1-P	Field mustard	cytosol	17.55	20.15
Bra036492.1-P	Field mustard	nucleus	19.21	19.53

Protein Annotations

EnsemblPlants:Bra000140.1	EnsemblPlants:Bra000140.1-P	EnsemblPlantsGene:Bra000140	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF19
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI00025401EC	UniProt:M4C7G2	MapMan:35.2

Description

AT2G39650 (E=9e-131) | unknown protein

Coordinates

chrA03:-:9501674..9503552

Molecular Weight (calculated)

33730.3 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.430

Length

302 amino acids

Sequence
(BLAST)

001: MGLDLRVVPA EEWWERGRDS SLDGECDLGL MVTDFIETGG GGSGGGGGGG DSWCSSDSDS GFPDPSYLSD KIQFLKYSMP QHETEVLSAV RTLMLSIKEK
101: DLHSVKSGTC NASCIRFYLA KLLRLSGYNA AVCSARWQGT GKVPGGDNEY IDIIMSDSPV GQDDRLIIDI DFRSHFEIAR AVDSYQRIME SLPVVYVGTV
201: ARLNQFLQVM VDAAKYSLKQ NSMPLPPWRS LNYLQSKWLS PYKRHLGPIN QEGPGMFSPG LHRQCAENLK RLQFALHTEQ EAERFVKKKK KSRERMRIHG
301: AP

Best Arabidopsis Sequence Match ( AT2G39650.1 )
(BLAST)

001: MGMDLRVVPA EEWLNRGIDS SHDGEHDLGL MVTDFLETGG GSGGAGSWCS SDSDSGFPDP SYLSDKIQYL KYSMAQHETE VLSVVRTLML TIKEKDLHSV
101: KSGTCNASCI RFYLAKLLRL SGYDAAVCSA RWQGGGKVPG GDNEYIDIIL SDTEVGQDDR LIVDIDFRSH FEIARAVDSY QRIMESLPVV YVGTVARLNQ
201: FLQVMVDAAK FSLKQNSMPL PPWRSLNYLR SKWHSPHKRH LGPIDQQGPG MFSPGLHGQC AENLKRLQFA LQVEQEAERF MKKKSGFSRR N

Arabidopsis Description

At2g39650 [Source:UniProtKB/TrEMBL;Acc:O48813]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.