Factsheet for GSMUA_Achr5P07100_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	51.06	75.86
VIT_13s0019g01100.t01	Wine grape	nucleus	32.88	62.5
Os01t0973600-01	Rice	plastid	38.1	58.46
KRH01670	Soybean	nucleus	34.82	58.44
KRH70457	Soybean	cytosol	34.24	57.47
TraesCS3A01G530700.1	Wheat	plastid	36.36	54.49
TraesCS3D01G536200.1	Wheat	plastid	36.17	54.05
TraesCS3B01G600900.1	Wheat	plastid	36.17	53.58
Zm00001d041955_P001	Maize	plastid	35.2	52.91
AT2G39650.1	Thale cress	cytosol	29.21	51.89
Bra000140.1-P	Field mustard	cytosol	30.17	51.66
CDY07644	Canola	cytosol	29.98	51.49
CDY24955	Canola	cytosol	29.98	51.32
PGSC0003DMT400025041	Potato	cytosol	29.01	48.08
Solyc06g005480.2.1	Tomato	cytosol	28.63	47.44
HORVU3Hr1G115940.1	Barley	plastid	36.75	44.92
GSMUA_Achr7P03040_001	Banana	nucleus	13.93	27.8
GSMUA_Achr4P14880_001	Banana	mitochondrion	13.73	26.89
GSMUA_Achr3P15230_001	Banana	cytosol	16.83	25.82
GSMUA_Achr8P20590_001	Banana	plastid	17.21	24.52
GSMUA_Achr8P26930_001	Banana	cytosol	16.63	24.36
GSMUA_Achr9P10660_001	Banana	cytosol, plastid	17.8	24.08
GSMUA_Achr4P21100_001	Banana	cytosol, plastid	16.05	23.12
GSMUA_Achr8P04470_001	Banana	cytosol	16.44	23.1
GSMUA_Achr3P31780_001	Banana	cytosol	12.77	23.0
GSMUA_Achr7P24960_001	Banana	cytosol	12.19	22.99
GSMUA_Achr9P25590_001	Banana	plastid	17.8	22.6
GSMUA_Achr4P02600_001	Banana	nucleus	11.99	22.3
GSMUA_Achr6P21070_001	Banana	cytosol	12.38	21.48
GSMUA_Achr3P03980_001	Banana	cytosol	11.41	20.56
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	6.77	16.83

Protein Annotations

EnsemblPlants:GSMUA_Achr5P07100_001	EnsemblPlants:GSMUA_Achr5T07100_001	EnsemblPlantsGene:GSMUA_Achr5G07100_001	InterPro:PDDEXK-like	PANTHER:PTHR15371	PANTHER:PTHR15371:SF2
PFAM:PF04720	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0002969F82	UniProt:M0SWD9	MapMan:35.1

Description

plant-specific domain TIGR01615 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G07100_001]

Coordinates

chr5:+:5137563..5145006

Molecular Weight (calculated)

57005.9 Da

IEP (calculated)

8.155

GRAVY (calculated)

-0.311

Length

517 amino acids

Sequence
(BLAST)

001: MLLSPEVGVW VGETPSAPAL ARRWPAKQCP RALDRRPVGG SRGGGEDDCR ICSATGDMWA RLNGGEGRDV IGQSGGFSHE SEHDLAVMVC DFLENGSGSA
101: ESRYSSDSDS RFSELAHLAE KVLLYKRAVT QYENDLQSIV GSLLFSIDEV DLYLVKEEQC NASCIRQSLV KLLKLSGYDA AVCSSRWQGF DKVPGGDHEY
201: IDVVVSDGGD SKHLIIDIDF RSYFEIARAV ESYDAILSSL PVVFVGSFPR LQQILQVMVD AAKFSLKQNS MPLPPWRSLA YLQAKWCSKY ERKHNVDKKH
301: QQNCSSDHRQ CVGHLQRLKA SLELEIESER LLKPATNDKK RTIKSERWRL SLRGRGLRGG KAAGEQPSGR EMPRSTFSGS ITAPEVYVTV DMGNPFLNRT
401: VDGFLRIGTV AASRVAAEEA YQCVRKGSIS KRKFEDALKR MCKEGVYWGT VTSVYVGVEH NIERISGTRT WKNAMLGGAI TGFLISAASN NGTDKIIKDT
501: ITAGAVATAI EFINLLT

Best Arabidopsis Sequence Match ( AT2G39650.1 )
(BLAST)

001: MGMDLRVVPA EEWLNRGIDS SHDGEHDLGL MVTDFLETGG GSGGAGSWCS SDSDSGFPDP SYLSDKIQYL KYSMAQHETE VLSVVRTLML TIKEKDLHSV
101: KSGTCNASCI RFYLAKLLRL SGYDAAVCSA RWQGGGKVPG GDNEYIDIIL SDTEVGQDDR LIVDIDFRSH FEIARAVDSY QRIMESLPVV YVGTVARLNQ
201: FLQVMVDAAK FSLKQNSMPL PPWRSLNYLR SKWHSPHKRH LGPIDQQGPG MFSPGLHGQC AENLKRLQFA LQVEQEAERF MKKKSGFSRR N

Arabidopsis Description

At2g39650 [Source:UniProtKB/TrEMBL;Acc:O48813]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.