Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G07350.1 | GSMUA_Achr11P... | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 46.31 | 46.15 |
| Os11t0437600-01 | Rice | plastid | 47.32 | 46.08 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 45.3 | 46.08 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 44.63 | 44.48 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 30.54 | 43.75 |
| TraesCS4A01G116900.1 | Wheat | plastid | 46.31 | 42.33 |
| Bra040373.1-P | Field mustard | plastid | 25.84 | 40.1 |
| Solyc06g007580.1.1 | Tomato | nucleus | 36.91 | 36.79 |
| PGSC0003DMT400053173 | Potato | nucleus | 36.58 | 36.45 |
| CDY60822 | Canola | nucleus | 35.57 | 35.45 |
| CDY34904 | Canola | nucleus | 35.57 | 35.1 |
| CDY35924 | Canola | nucleus | 35.23 | 35.0 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 34.9 | 34.67 |
| Bra029641.1-P | Field mustard | nucleus | 34.9 | 34.67 |
| AT3G07350.1 | Thale cress | nucleus | 34.56 | 34.56 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 31.88 | 33.69 |
| Solyc06g083160.1.1 | Tomato | nucleus | 32.89 | 33.45 |
| KRH07392 | Soybean | nucleus | 32.89 | 32.78 |
| KRH46613 | Soybean | mitochondrion, nucleus | 30.87 | 32.28 |
| AT3G25240.1 | Thale cress | cytosol | 29.87 | 31.67 |
| PGSC0003DMT400051812 | Potato | nucleus | 31.21 | 31.31 |
| PGSC0003DMT400008686 | Potato | cytosol | 28.19 | 30.66 |
| Bra013223.1-P | Field mustard | nucleus | 28.86 | 30.5 |
| CDY52283 | Canola | nucleus | 28.52 | 30.14 |
| CDY15101 | Canola | nucleus | 27.85 | 29.86 |
| GSMUA_Achr4P14880_001 | Banana | mitochondrion | 25.17 | 28.41 |
| GSMUA_Achr4P21100_001 | Banana | cytosol, plastid | 31.88 | 26.46 |
| GSMUA_Achr3P15230_001 | Banana | cytosol | 29.87 | 26.41 |
| GSMUA_Achr8P20590_001 | Banana | plastid | 30.87 | 25.34 |
| GSMUA_Achr3P03980_001 | Banana | cytosol | 24.16 | 25.09 |
| GSMUA_Achr8P26930_001 | Banana | cytosol | 28.86 | 24.36 |
| GSMUA_Achr7P03040_001 | Banana | nucleus | 20.81 | 23.94 |
| GSMUA_Achr9P10660_001 | Banana | cytosol, plastid | 30.54 | 23.82 |
| GSMUA_Achr9P25590_001 | Banana | plastid | 32.21 | 23.59 |
| GSMUA_Achr8P04470_001 | Banana | cytosol | 28.19 | 22.83 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 20.47 | 22.26 |
| Solyc09g057760.2.1 | Tomato | nucleus | 16.11 | 22.22 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 20.81 | 21.6 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 19.46 | 20.86 |
| GSMUA_Achr10P... | Banana | mitochondrion | 22.15 | 18.97 |
| GSMUA_Achr5P07100_001 | Banana | cytosol | 21.48 | 12.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P21070_001 | EnsemblPlants:GSMUA_Achr6T21070_001 | EnsemblPlantsGene:GSMUA_Achr6G21070_001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF9 |
| PFAM:PF04720 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI000296ED4A | UniProt:M0T8V5 | MapMan:35.2 |
Description
Putative plant-specific domain TIGR01615 family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G21070_001]
Coordinates
chr6:+:16338548..16339444
Molecular Weight (calculated)
31814.7 Da
IEP (calculated)
8.448
GRAVY (calculated)
-0.308
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSMRAKRV TDPLGEDARA RLRGYDRRRL TGYASSGSDH EALSSLVHAF FECDDCDSPS AADAAAAGEP GDRMSDSDGG DQSEKAAAAV GELVGGWRKS
101: DDPFRLRLLS DASKAADAMA TLRSSAFGYR RAVMALLREM GYDAGICKAR WESSGNLVHG SYEYIDVVVP AAAPAGKEGK EDRRYIVDLG FAAEFKVARA
201: TEAYENVVAA LPEMMVAQPE EVKQVVRMVG DAGRRSLKSQ GLHVPPWRKG RYIMAKWLGP YRRTVNAVPA SAAPSGAGGA EAKCRAVGFT AAKGTIIC
101: DDPFRLRLLS DASKAADAMA TLRSSAFGYR RAVMALLREM GYDAGICKAR WESSGNLVHG SYEYIDVVVP AAAPAGKEGK EDRRYIVDLG FAAEFKVARA
201: TEAYENVVAA LPEMMVAQPE EVKQVVRMVG DAGRRSLKSQ GLHVPPWRKG RYIMAKWLGP YRRTVNAVPA SAAPSGAGGA EAKCRAVGFT AAKGTIIC
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.