Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60822 | Canola | nucleus | 96.69 | 97.66 |
| Bra040373.1-P | Field mustard | plastid | 61.59 | 96.88 |
| CDY35924 | Canola | nucleus | 82.45 | 83.0 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 82.12 | 82.67 |
| AT3G07350.1 | Thale cress | nucleus | 80.46 | 81.54 |
| VIT_00s0337g00040.t01 | Wine grape | cytosol | 45.36 | 48.58 |
| CDY52283 | Canola | nucleus | 44.37 | 47.52 |
| CDY15101 | Canola | nucleus | 42.72 | 46.4 |
| Solyc06g007580.1.1 | Tomato | nucleus | 45.7 | 46.15 |
| PGSC0003DMT400053173 | Potato | nucleus | 45.03 | 45.48 |
| PGSC0003DMT400051812 | Potato | nucleus | 44.7 | 45.45 |
| Solyc06g083160.1.1 | Tomato | nucleus | 43.38 | 44.71 |
| KRH07392 | Soybean | nucleus | 42.05 | 42.47 |
| KRH46613 | Soybean | mitochondrion, nucleus | 38.41 | 40.7 |
| PGSC0003DMT400008686 | Potato | cytosol | 34.77 | 38.32 |
| GSMUA_Achr6P21070_001 | Banana | cytosol | 35.1 | 35.57 |
| HORVU4Hr1G054810.1 | Barley | mitochondrion | 33.44 | 34.47 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 34.11 | 34.45 |
| Os11t0437600-01 | Rice | plastid | 34.11 | 33.66 |
| Os01t0915000-01 | Rice | cytosol | 32.45 | 33.45 |
| TraesCS4B01G187500.1 | Wheat | mitochondrion | 32.78 | 33.11 |
| EES04096 | Sorghum | cytosol | 32.12 | 32.77 |
| Zm00001d012069_P001 | Maize | mitochondrion | 31.13 | 32.64 |
| Zm00001d042376_P001 | Maize | cytosol | 31.46 | 32.31 |
| TraesCS3B01G456400.1 | Wheat | cytosol | 30.46 | 31.94 |
| TraesCS3A01G420900.1 | Wheat | cytosol | 30.13 | 31.38 |
| TraesCS4A01G116900.1 | Wheat | plastid | 33.77 | 31.29 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 30.13 | 31.16 |
| Solyc09g057760.2.1 | Tomato | nucleus | 21.19 | 29.63 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 20.2 | 29.33 |
| CDY21027 | Canola | cytosol | 26.49 | 27.12 |
| CDX93300 | Canola | cytosol | 26.82 | 27.0 |
| CDY18366 | Canola | cytosol | 26.82 | 27.0 |
| CDY53353 | Canola | mitochondrion | 25.83 | 26.62 |
| CDY31234 | Canola | cytosol | 25.83 | 26.53 |
| CDY07644 | Canola | cytosol | 26.16 | 26.25 |
| CDY24955 | Canola | cytosol | 26.16 | 26.16 |
| CDY30048 | Canola | mitochondrion | 25.17 | 25.76 |
| CDX88344 | Canola | cytosol | 21.85 | 24.91 |
| CDX87538 | Canola | nucleus | 21.19 | 24.9 |
| CDX88346 | Canola | nucleus | 20.86 | 24.51 |
| CDY14428 | Canola | cytosol | 24.83 | 24.12 |
| CDX92970 | Canola | cytosol | 26.49 | 24.02 |
| CDX87540 | Canola | cytosol | 20.86 | 23.95 |
| CDY07696 | Canola | cytosol | 24.5 | 23.72 |
| CDX88345 | Canola | nucleus | 20.86 | 23.51 |
| CDX87539 | Canola | nucleus | 20.86 | 23.51 |
| CDY10330 | Canola | cytosol | 28.15 | 23.22 |
| HORVU3Hr1G093260.1 | Barley | plastid | 31.13 | 23.21 |
| CDY29750 | Canola | nucleus, plastid | 27.15 | 23.16 |
| CDX94877 | Canola | cytosol | 26.49 | 23.05 |
| CDY16266 | Canola | nucleus | 27.15 | 22.97 |
| CDY10329 | Canola | plastid | 26.82 | 21.43 |
| CDX92863 | Canola | nucleus | 19.21 | 19.66 |
| CDY29898 | Canola | nucleus | 18.87 | 19.32 |
| CDY49659 | Canola | nucleus | 18.54 | 18.73 |
| CDY18979 | Canola | nucleus | 18.54 | 18.73 |
| CDY05782 | Canola | nucleus | 18.21 | 18.52 |
| CDY31947 | Canola | nucleus | 18.21 | 18.52 |
| CDX81975 | Canola | nucleus | 17.88 | 18.24 |
| CDY13861 | Canola | nucleus | 17.22 | 17.57 |
Protein Annotations
| EnsemblPlants:CDY34904 | EnsemblPlantsGene:GSBRNA2T00057475001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF4 | PFAM:PF04720 |
| ProteinID:CDY34904 | ProteinID:CDY34904.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0004EF218C | UniProt:A0A078HBS1 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA01g32350DBnaA01g32350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBS1]
Coordinates
chrLK032343:-:14718..15626
Molecular Weight (calculated)
33846.9 Da
IEP (calculated)
8.055
GRAVY (calculated)
-0.480
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSRAKRVT DPLPDEARAR LVGCSFSSGS EHTGDEDYDD DSPCLSELVQ GFLEDEVNQT VHDESRWCDN DSDSDSSSDS ERADLPDYAD DIAKILRNSL
101: REDNYGRMVL FHVAKAMEML SSSRSDQEQR AVLRRKLMSL LRELGHNAAI CKTKWKSSGG GFTAGNHEFI DVVYIPTATS SQTVRYIVDI DFKSHFQVAR
201: PTVQYARVLQ SLPTIFVGRG EDLKRILRLV CDAARISLKS CGLTLPPWRK NRYIQTRWLG SYKRTVNLTP SSSRAANTVM CRAIGFDNAV GGGGSRLFVR
301: TR
101: REDNYGRMVL FHVAKAMEML SSSRSDQEQR AVLRRKLMSL LRELGHNAAI CKTKWKSSGG GFTAGNHEFI DVVYIPTATS SQTVRYIVDI DFKSHFQVAR
201: PTVQYARVLQ SLPTIFVGRG EDLKRILRLV CDAARISLKS CGLTLPPWRK NRYIQTRWLG SYKRTVNLTP SSSRAANTVM CRAIGFDNAV GGGGSRLFVR
301: TR
001: MGFSRAKRVT DPLAEEVRAR LVGCSFSSGS EHTGDGIEDY EDDDSPCLSD LVQGFLEDEV DTVDDESCWC DQDSGSDSDS DSELGELPDF ADDIAKLLRN
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
101: SLREDSYGRT VLVHVARAME MLSSLGSQPE QRAVFQRKVM SLLRELGHNA AICKTKWKSS GGLTAGNHEF IDVVYTPSAS SQSVRFIVDL DFSSRFQIAR
201: PTSQYARVLQ SLPAVFVGKG DDLKRILRLV CDAARISLRN RGLTLPPWRK NRYMQTRWLG PYKRTTNLTP STSGVDTVMC RAIGFDNAVG GRLFVRTR
Arabidopsis Description
F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.