CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019736.1-P	Field mustard	mitochondrion	98.98	98.98
CDY30048	Canola	mitochondrion	86.35	85.76
CDY21027	Canola	cytosol	81.91	81.36
CDY31234	Canola	cytosol	80.55	80.27
AT1G12030.1	Thale cress	mitochondrion	76.79	76.27
Solyc11g012120.1.1	Tomato	cytosol	42.66	42.09
KRH11519	Soybean	mitochondrion	43.34	40.71
KRH51155	Soybean	cytosol	40.61	40.07
VIT_12s0059g01640.t01	Wine grape	nucleus	40.27	39.2
KRH36535	Soybean	endoplasmic reticulum, golgi	44.03	38.39
EES07354	Sorghum	cytosol	31.4	29.77
GSMUA_Achr3P03980_001	Banana	cytosol	29.01	29.62
TraesCS6A01G283100.1	Wheat	cytosol	29.01	27.33
Zm00001d051691_P001	Maize	cytosol	29.01	27.07
CDY35924	Canola	nucleus	27.65	27.0
CDY28060	Canola	cytosol, nucleus, plastid	27.65	27.0
TraesCS6D01G263600.1	Wheat	cytosol	29.35	26.88
CDY15101	Canola	nucleus	25.26	26.62
CDY52283	Canola	nucleus	25.6	26.6
CDY60822	Canola	nucleus	26.96	26.42
CDY34904	Canola	nucleus	26.62	25.83
Os02t0720400-00	Rice	nucleus	29.01	25.68
CDX93300	Canola	cytosol	23.89	23.33
CDY18366	Canola	cytosol	23.89	23.33
CDX88344	Canola	cytosol	20.14	22.26
CDX88346	Canola	nucleus	19.45	22.18
CDY14428	Canola	cytosol	23.21	21.86
CDY07696	Canola	cytosol	23.21	21.79
CDX87538	Canola	nucleus	19.11	21.79
CDX87540	Canola	cytosol	19.11	21.29
CDX87539	Canola	nucleus	19.11	20.9
CDX88345	Canola	nucleus	19.11	20.9
CDX92970	Canola	cytosol	23.55	20.72
CDY07644	Canola	cytosol	21.16	20.6
CDY24955	Canola	cytosol	21.16	20.53
CDY29898	Canola	nucleus	20.48	20.34
CDY31947	Canola	nucleus	20.48	20.2
CDX92863	Canola	nucleus	20.14	20.0
CDY05782	Canola	nucleus	20.14	19.87
CDY29750	Canola	nucleus, plastid	23.89	19.77
CDY18979	Canola	nucleus	19.8	19.4
CDY16266	Canola	nucleus	23.55	19.33
CDX94877	Canola	cytosol	22.87	19.31
CDY10330	Canola	cytosol	23.89	19.13
CDY49659	Canola	nucleus	19.45	19.06
CDY13861	Canola	nucleus	18.77	18.58
CDX81975	Canola	nucleus	18.77	18.58
CDY10329	Canola	plastid	23.21	17.99

Protein Annotations

EnsemblPlants:CDY53353	EnsemblPlantsGene:GSBRNA2T00010491001	InterPro:PDDEXK-like	PANTHER:PTHR31579	PANTHER:PTHR31579:SF15	PFAM:PF04720
ProteinID:CDY53353	ProteinID:CDY53353.1	SEG:seg	TIGRFAMs:TIGR01615	UniParc:UPI0004EED557	UniProt:A0A078IWH7
MapMan:35.2	:	:	:	:	:

Description

BnaA06g38280DBnaA06g38280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IWH7]

Coordinates

chrLK033191:+:71456..72981

Molecular Weight (calculated)

33739.8 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.705

Length

293 amino acids

Sequence
(BLAST)

001: MVQIPRRFNR FAAAFDVVAA RTRPPCDSSS GSDHFPEETQ DLWDLIESFI DREVKVLSGE VPPGEENDDK SDADDDDDED VKERLREILE NHGGGGERRR
101: IIDEVVNASE LVGEKRYLMA YLRKKGFDAG LCKSRWERFG KNTAGKYEYV DVNEGDKNRF IVETNLAGEF EIARPTTRYI SLLSQLPRVF VGTPEELKQL
201: VRIMSFEVRR SMKRAEIHVP PWRRNGYMQA KWFGHYKRTS NEVVTRVWSC GCGPRVGFEE SVETATFIGS KEVEWKRNGF KKVGQLTVAF KQQ

Best Arabidopsis Sequence Match ( AT1G12030.1 )
(BLAST)

001: MVEIGGRFIR TAAAFDVAAA RARPPCASSS GSDHSPDDTE DLWDLVESFI DREVETLPED AFQEEEDDKS DEDYEDVKER LREILENHGG EERQRIMDEA
101: VNASRVFAGE KRHFMAYLRN KGFDAGLCKS RWEKFGKNTA GKYEYVDVKA GDKNRYIVET NLAGEFEIAR PTTRYLSVLA QVPRVFVGTP EELKQLVRIM
201: CFEIRRSMKR ADIFVPPWRR NGYMQAKWFG HYKRTSNEVV SRVKSCGCGP RVGFEESVKM TTFNGFKDGE MRRSGLKVGQ LTVAFNGSEV GLQIF

Arabidopsis Description

At1g12030 [Source:UniProtKB/TrEMBL;Acc:O65376]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.