Factsheet for VIT_12s0059g01640.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11519	Soybean	mitochondrion	48.51	46.79
KRH37828	Soybean	cytosol	22.59	45.03
KRH36535	Soybean	endoplasmic reticulum, golgi	49.5	44.35
KRH51155	Soybean	cytosol	42.19	42.76
AT1G12030.1	Thale cress	mitochondrion	41.2	42.03
Solyc11g012120.1.1	Tomato	cytosol	41.2	41.75
CDY53353	Canola	mitochondrion	39.2	40.27
Bra019736.1-P	Field mustard	mitochondrion	38.54	39.59
AT1G62420.1	Thale cress	cytosol	36.88	39.22
CDY30048	Canola	mitochondrion	37.87	38.64
CDY31234	Canola	cytosol	36.88	37.76
CDY21027	Canola	cytosol	36.88	37.63
Bra016797.1-P	Field mustard	cytosol	36.54	37.29
GSMUA_Achr3P03980_001	Banana	cytosol	29.57	31.01
VIT_00s0337g00040.t01	Wine grape	cytosol	28.9	30.85
EES07354	Sorghum	cytosol	29.57	28.8
TraesCS6A01G283100.1	Wheat	cytosol	28.57	27.65
Os02t0720400-00	Rice	nucleus	29.9	27.19
TraesCS6D01G263600.1	Wheat	cytosol	28.9	27.19
Zm00001d051691_P001	Maize	cytosol	28.24	27.07
VIT_12s0028g03560.t01	Wine grape	cytosol	22.59	22.44
VIT_13s0019g01100.t01	Wine grape	nucleus	20.27	22.43
VIT_18s0001g15610.t01	Wine grape	cytosol	19.6	21.38
VIT_00s0265g00090.t01	Wine grape	mitochondrion	21.59	21.04
VIT_04s0044g00970.t01	Wine grape	cytosol	18.6	20.66
VIT_18s0001g06070.t01	Wine grape	nucleus	18.27	20.52
VIT_05s0020g04500.t01	Wine grape	nucleus	25.91	20.21
VIT_00s0179g00360.t01	Wine grape	cytosol	24.92	18.89

Protein Annotations

EntrezGene:100243092	wikigene:100243092	MapMan:35.2	ProteinID:CCB52008	ProteinID:CCB52008.1	UniProt:F6HIG2
EMBL:FN595765	EntrezGene:LOC100243092	wikigene:LOC100243092	InterPro:PDDEXK-like	PFAM:PF04720	PANTHER:PTHR31579
PANTHER:PTHR31579:SF15	TIGRFAMs:TIGR01615	UniParc:UPI00015CAFD9	ArrayExpress:VIT_12s0059g01640	EnsemblPlantsGene:VIT_12s0059g01640	EnsemblPlants:VIT_12s0059g01640.t01
unigene:Vvi.25262	RefSeq:XP_002271985	RefSeq:XP_002271985.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:-:6544879..6546518

Molecular Weight (calculated)

34287.9 Da

IEP (calculated)

4.994

GRAVY (calculated)

-0.549

Length

301 amino acids

Sequence
(BLAST)

001: MAMRFKRVSA AFDDVARARL CDSSGSDHSE EDDSEELSDL VDSFLERDVI ELQVGDEDGK MEEERSDFDS ENRWSDSLTR EMLQSLISGD DGNDDGDDDV
101: KRKIRDELEV KCRSLENCQA EGFKRRLMTL LRRRGFDAGL CKSRWEKTGR CPGGEYEYID VVVAESRYVV EVFLAGEFTI ARPTSYYQTL LRLFPCVMVV
201: KQFELKQMVR LMCAEMKKSM KIRDMPVPPW RKNGYMQAKW FGPYKRTVNA IPTGKSSDSS EGLAGKGLIG LPVVYNCSGE FVRKVGFRSG RMGQVLNGME
301: L

Best Arabidopsis Sequence Match ( AT1G12030.1 )
(BLAST)

001: MVEIGGRFIR TAAAFDVAAA RARPPCASSS GSDHSPDDTE DLWDLVESFI DREVETLPED AFQEEEDDKS DEDYEDVKER LREILENHGG EERQRIMDEA
101: VNASRVFAGE KRHFMAYLRN KGFDAGLCKS RWEKFGKNTA GKYEYVDVKA GDKNRYIVET NLAGEFEIAR PTTRYLSVLA QVPRVFVGTP EELKQLVRIM
201: CFEIRRSMKR ADIFVPPWRR NGYMQAKWFG HYKRTSNEVV SRVKSCGCGP RVGFEESVKM TTFNGFKDGE MRRSGLKVGQ LTVAFNGSEV GLQIF

Arabidopsis Description

At1g12030 [Source:UniProtKB/TrEMBL;Acc:O65376]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.