Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016797.1-P | Field mustard | cytosol | 77.97 | 77.97 |
| CDY21027 | Canola | cytosol | 77.97 | 77.97 |
| CDY31234 | Canola | cytosol | 76.95 | 77.21 |
| CDY53353 | Canola | mitochondrion | 76.27 | 76.79 |
| Bra019736.1-P | Field mustard | mitochondrion | 76.27 | 76.79 |
| CDY30048 | Canola | mitochondrion | 76.61 | 76.61 |
| AT1G62420.1 | Thale cress | cytosol | 61.02 | 63.6 |
| KRH51155 | Soybean | cytosol | 42.37 | 42.09 |
| KRH11519 | Soybean | mitochondrion | 44.07 | 41.67 |
| VIT_12s0059g01640.t01 | Wine grape | nucleus | 42.03 | 41.2 |
| Solyc11g012120.1.1 | Tomato | cytosol | 40.34 | 40.07 |
| KRH36535 | Soybean | endoplasmic reticulum, golgi | 44.07 | 38.69 |
| EES07354 | Sorghum | cytosol | 31.19 | 29.77 |
| GSMUA_Achr3P03980_001 | Banana | cytosol | 28.47 | 29.27 |
| AT3G25240.1 | Thale cress | cytosol | 26.1 | 27.4 |
| Zm00001d051691_P001 | Maize | cytosol | 28.81 | 27.07 |
| TraesCS6A01G283100.1 | Wheat | cytosol | 28.47 | 27.01 |
| TraesCS6D01G263600.1 | Wheat | cytosol | 29.15 | 26.88 |
| AT3G07350.1 | Thale cress | nucleus | 26.44 | 26.17 |
| Os02t0720400-00 | Rice | nucleus | 29.15 | 25.98 |
| AT1G77145.1 | Thale cress | cytosol | 20.68 | 23.46 |
| AT3G54550.1 | Thale cress | plastid | 21.69 | 22.22 |
| AT1G77160.1 | Thale cress | cytosol | 19.32 | 21.67 |
| AT4G32480.1 | Thale cress | nucleus | 21.02 | 21.6 |
| AT2G38820.2 | Thale cress | cytosol | 21.36 | 20.32 |
| AT2G39650.1 | Thale cress | cytosol | 18.64 | 18.9 |
| AT4G14620.1 | Thale cress | cytosol | 20.68 | 17.89 |
| AT3G22970.1 | Thale cress | plastid | 22.37 | 17.84 |
| AT2G20670.1 | Thale cress | nucleus | 17.63 | 17.69 |
Protein Annotations
| MapMan:35.2 | EntrezGene:837755 | UniProt:A0A178WFB9 | ProteinID:AAC17612.1 | ProteinID:AEE28828.1 | EMBL:AK175520 |
| ArrayExpress:AT1G12030 | EnsemblPlantsGene:AT1G12030 | RefSeq:AT1G12030 | TAIR:AT1G12030 | RefSeq:AT1G12030-TAIR-G | EnsemblPlants:AT1G12030.1 |
| TAIR:AT1G12030.1 | EMBL:BT010654 | RefSeq:NP_172667.1 | UniProt:O65376 | ProteinID:OAP17087.1 | InterPro:PDDEXK-like |
| PFAM:PF04720 | PO:PO:0000293 | PO:PO:0007115 | PO:PO:0009025 | PO:PO:0025195 | PANTHER:PTHR31579 |
| PANTHER:PTHR31579:SF15 | TIGRFAMs:TIGR01615 | UniParc:UPI00000A5E1E | SEG:seg | : | : |
Description
At1g12030 [Source:UniProtKB/TrEMBL;Acc:O65376]
Coordinates
chr1:-:4064485..4066344
Molecular Weight (calculated)
33659.7 Da
IEP (calculated)
5.854
GRAVY (calculated)
-0.611
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MVEIGGRFIR TAAAFDVAAA RARPPCASSS GSDHSPDDTE DLWDLVESFI DREVETLPED AFQEEEDDKS DEDYEDVKER LREILENHGG EERQRIMDEA
101: VNASRVFAGE KRHFMAYLRN KGFDAGLCKS RWEKFGKNTA GKYEYVDVKA GDKNRYIVET NLAGEFEIAR PTTRYLSVLA QVPRVFVGTP EELKQLVRIM
201: CFEIRRSMKR ADIFVPPWRR NGYMQAKWFG HYKRTSNEVV SRVKSCGCGP RVGFEESVKM TTFNGFKDGE MRRSGLKVGQ LTVAFNGSEV GLQIF
101: VNASRVFAGE KRHFMAYLRN KGFDAGLCKS RWEKFGKNTA GKYEYVDVKA GDKNRYIVET NLAGEFEIAR PTTRYLSVLA QVPRVFVGTP EELKQLVRIM
201: CFEIRRSMKR ADIFVPPWRR NGYMQAKWFG HYKRTSNEVV SRVKSCGCGP RVGFEESVKM TTFNGFKDGE MRRSGLKVGQ LTVAFNGSEV GLQIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.