Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G20670.1 | CDY42827 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | CDY51514 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | CDY55390 | AT2G42580.1 | 19000166 |
| AT2G20670.1 | CDY61202 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036492.1-P | Field mustard | nucleus | 97.98 | 97.98 |
| CDY05782 | Canola | nucleus | 97.64 | 97.64 |
| CDX81975 | Canola | nucleus | 89.56 | 89.86 |
| CDY13861 | Canola | nucleus | 88.22 | 88.51 |
| AT2G20670.1 | Thale cress | nucleus | 86.87 | 87.76 |
| CDY29898 | Canola | nucleus | 73.4 | 73.9 |
| CDX92863 | Canola | nucleus | 73.4 | 73.9 |
| CDY18979 | Canola | nucleus | 70.71 | 70.23 |
| CDY49659 | Canola | nucleus | 70.37 | 69.9 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 51.85 | 50.83 |
| KRH25597 | Soybean | nucleus | 44.78 | 46.34 |
| PGSC0003DMT400047228 | Potato | nucleus | 42.76 | 44.72 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 37.37 | 42.37 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 38.72 | 41.97 |
| Solyc07g053900.2.1 | Tomato | cytosol | 44.78 | 41.56 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 40.07 | 41.46 |
| Zm00001d043444_P001 | Maize | nucleus | 39.06 | 40.85 |
| EES01469 | Sorghum | nucleus | 38.72 | 40.78 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 38.05 | 40.65 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 37.37 | 39.78 |
| TraesCS3A01G274100.1 | Wheat | nucleus | 36.7 | 39.07 |
| TraesCS3D01G273300.1 | Wheat | nucleus | 36.36 | 38.99 |
| HORVU1Hr1G076120.1 | Barley | nucleus | 35.35 | 37.37 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 36.03 | 36.9 |
| TraesCS1B01G352000.1 | Wheat | nucleus | 35.02 | 36.36 |
| TraesCS1A01G339700.1 | Wheat | cytosol | 35.35 | 36.08 |
| Os05t0519300-01 | Rice | cytosol | 35.69 | 34.64 |
| EES19824 | Sorghum | cytosol | 35.02 | 34.55 |
| CDX88346 | Canola | nucleus | 19.19 | 22.18 |
| CDX87538 | Canola | nucleus | 19.19 | 22.18 |
| CDY31234 | Canola | cytosol | 20.88 | 21.09 |
| CDY21027 | Canola | cytosol | 20.88 | 21.02 |
| CDY15101 | Canola | nucleus | 19.19 | 20.5 |
| CDY53353 | Canola | mitochondrion | 20.2 | 20.48 |
| CDX88344 | Canola | cytosol | 18.18 | 20.38 |
| CDY52283 | Canola | nucleus | 19.19 | 20.21 |
| CDX88345 | Canola | nucleus | 18.18 | 20.15 |
| CDY30048 | Canola | mitochondrion | 19.87 | 20.0 |
| CDX87539 | Canola | nucleus | 17.85 | 19.78 |
| CDX87540 | Canola | cytosol | 17.51 | 19.77 |
| CDY28060 | Canola | cytosol, nucleus, plastid | 19.53 | 19.33 |
| CDY35924 | Canola | nucleus | 19.53 | 19.33 |
| CDY07644 | Canola | cytosol | 19.53 | 19.27 |
| CDX92970 | Canola | cytosol | 21.21 | 18.92 |
| CDY24955 | Canola | cytosol | 19.19 | 18.87 |
| CDY29750 | Canola | nucleus, plastid | 22.22 | 18.64 |
| CDY34904 | Canola | nucleus | 18.52 | 18.21 |
| CDY60822 | Canola | nucleus | 18.18 | 18.06 |
| CDY18366 | Canola | cytosol | 18.18 | 18.0 |
| CDX93300 | Canola | cytosol | 18.18 | 18.0 |
| CDY16266 | Canola | nucleus | 21.55 | 17.93 |
| CDY07696 | Canola | cytosol | 18.52 | 17.63 |
| CDX94877 | Canola | cytosol | 20.54 | 17.58 |
| CDY14428 | Canola | cytosol | 18.18 | 17.36 |
| CDY10330 | Canola | cytosol | 20.88 | 16.94 |
| CDY10329 | Canola | plastid | 20.54 | 16.14 |
Protein Annotations
| EnsemblPlants:CDY31947 | EnsemblPlantsGene:GSBRNA2T00050732001 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF33 | PFAM:PF04720 |
| ProteinID:CDY31947 | ProteinID:CDY31947.1 | SEG:seg | TIGRFAMs:TIGR01615 | UniParc:UPI0004EF166A | UniProt:A0A078H365 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA07g00480DBnaA07g00480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H365]
Coordinates
chrLK032283:+:96619..98310
Molecular Weight (calculated)
33455.9 Da
IEP (calculated)
7.287
GRAVY (calculated)
-0.556
Length
297 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRQNSDDIV RFLDGMASSD DVLFGFLDEG NQSPEDFPDS GNLNGGGDID DVDDNSNCNP EVNKAFWQEQ EKLLQGTLYR TSSIETKIRQ ATKEALKEVK
101: SKGLYCVCRR PVAGGCRSCL RGEISRHLRD VAGYDCVISK SKWRSSQDIP AGEHEYIEIL DRSDSKKGEM RVVIELSFRA EFEIAKGGEE YKRLISRLPE
201: VYVGKTERLR SLIKILCIAG KKCLRDKKMH MGPWRKHKYM QAKWLGTCDR SSSLEAVVVS ETTEPENWVP LVKPRISMLN YDGLSTGMGR SAAVTVV
101: SKGLYCVCRR PVAGGCRSCL RGEISRHLRD VAGYDCVISK SKWRSSQDIP AGEHEYIEIL DRSDSKKGEM RVVIELSFRA EFEIAKGGEE YKRLISRLPE
201: VYVGKTERLR SLIKILCIAG KKCLRDKKMH MGPWRKHKYM QAKWLGTCDR SSSLEAVVVS ETTEPENWVP LVKPRISMLN YDGLSTGMGR SAAVTVV
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.