Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G274100.1 | Wheat | nucleus | 95.67 | 94.98 |
| TraesCS3B01G307800.1 | Wheat | nucleus | 94.22 | 93.55 |
| HORVU3Hr1G071220.1 | Barley | nucleus | 87.36 | 92.37 |
| EES01469 | Sorghum | nucleus | 74.73 | 73.4 |
| Zm00001d043444_P001 | Maize | nucleus | 72.2 | 70.42 |
| TraesCS1D01G341700.1 | Wheat | cytosol | 63.54 | 60.69 |
| GSMUA_Achr3P31780_001 | Banana | cytosol | 53.43 | 51.57 |
| GSMUA_Achr4P02600_001 | Banana | nucleus | 49.46 | 49.28 |
| GSMUA_Achr7P24960_001 | Banana | cytosol | 48.74 | 49.27 |
| VIT_12s0028g03560.t01 | Wine grape | cytosol | 44.4 | 40.59 |
| Bra024209.1-P | Field mustard | nucleus | 42.24 | 39.66 |
| CDY29898 | Canola | nucleus | 42.24 | 39.66 |
| VIT_00s0265g00090.t01 | Wine grape | mitochondrion | 44.04 | 39.48 |
| CDY18979 | Canola | nucleus | 42.24 | 39.13 |
| KRH25597 | Soybean | nucleus | 40.43 | 39.02 |
| CDX92863 | Canola | nucleus | 41.16 | 38.64 |
| AT4G32480.1 | Thale cress | nucleus | 39.71 | 38.33 |
| CDX81975 | Canola | nucleus | 40.79 | 38.18 |
| CDY49659 | Canola | nucleus | 41.16 | 38.13 |
| Bra026262.1-P | Field mustard | nucleus | 41.16 | 38.13 |
| CDY13861 | Canola | nucleus | 40.43 | 37.84 |
| Bra031136.1-P | Field mustard | nucleus | 39.71 | 37.41 |
| Bra036492.1-P | Field mustard | nucleus | 40.07 | 37.37 |
| CDY05782 | Canola | nucleus | 39.71 | 37.04 |
| PGSC0003DMT400076442 | Potato | nucleus | 39.71 | 36.42 |
| CDY31947 | Canola | nucleus | 38.99 | 36.36 |
| KRH10888 | Soybean | mitochondrion | 39.35 | 36.33 |
| Solyc02g078150.2.1 | Tomato | nucleus | 39.71 | 35.71 |
| PGSC0003DMT400047228 | Potato | nucleus | 36.46 | 35.56 |
| KRH21430 | Soybean | mitochondrion, nucleus | 38.27 | 35.1 |
| Solyc03g006410.2.1 | Tomato | cytosol | 38.27 | 34.87 |
| PGSC0003DMT400033381 | Potato | cytosol, mitochondrion, nucleus | 38.27 | 34.64 |
| AT2G20670.1 | Thale cress | nucleus | 36.1 | 34.01 |
| KRH50053 | Soybean | mitochondrion | 39.35 | 33.85 |
| Solyc02g078160.2.1 | Tomato | nucleus | 36.82 | 33.77 |
| KRH20449 | Soybean | mitochondrion | 40.07 | 33.74 |
| Solyc07g053900.2.1 | Tomato | cytosol | 35.74 | 30.94 |
| TraesCS4D01G277000.1 | Wheat | peroxisome, plastid | 28.16 | 25.08 |
| TraesCS3D01G404300.1 | Wheat | nucleus | 22.02 | 24.8 |
| TraesCS3D01G416400.1 | Wheat | cytosol | 23.83 | 22.6 |
| TraesCS6D01G263600.1 | Wheat | cytosol | 25.63 | 22.19 |
| TraesCS5D01G446400.1 | Wheat | plastid | 30.32 | 22.05 |
| TraesCS4D01G188800.1 | Wheat | mitochondrion | 22.02 | 20.4 |
| TraesCS3D01G536200.1 | Wheat | plastid | 25.27 | 20.23 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G273300.1 | EnsemblPlantsGene:TraesCS3D01G273300 | InterPro:PDDEXK-like | PANTHER:PTHR31579 | PANTHER:PTHR31579:SF7 | PFAM:PF04720 |
| SEG:seg | TIGRFAMs:TIGR01615 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3D:-:378929182..378932474
Molecular Weight (calculated)
30182.7 Da
IEP (calculated)
7.437
GRAVY (calculated)
-0.421
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVEEAMDGD MSLSNMVLSF LEEGETERWP ENDDNDDEEE EGSSGGGSAE SKAFWRAQHS QLHEALGKTS TAESRIRAVT EKAVEKMRAP AGAVCSCARR
101: AAAGDCRSCM LRHVVERLRD AGYNGAVCRS KWARSLDIPS GEHSYVDVVL QTRSGKAARV VVEPSFRAEF EVARAGAGYR ALVAALPEAF VGRADRLRAV
201: VKAMCAAAKQ CMKENNMHLG PWRKHKYMQS KWLGTSEREA PAAIDTVAAG SPSPEKQPKF RASMLSFDFG RAPVVVA
101: AAAGDCRSCM LRHVVERLRD AGYNGAVCRS KWARSLDIPS GEHSYVDVVL QTRSGKAARV VVEPSFRAEF EVARAGAGYR ALVAALPEAF VGRADRLRAV
201: VKAMCAAAKQ CMKENNMHLG PWRKHKYMQS KWLGTSEREA PAAIDTVAAG SPSPEKQPKF RASMLSFDFG RAPVVVA
001: MDRQSSDDIM KFLDGMASSD DVLFGFLDEG NHSPEDYNFA AGDESEVDND TTDCNSEENR KFWQEHEQLL QATLYRTSSI ETKIRQATKE ALKVVRSKGL
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
101: VCVCRRPVTD GCRSCLRGEV SSLLREAGYD CVISKSKWRS SHEIPAGEHE YLEVVDKSVS KKGEIRVVIE LCFRAEFEMA RGSEEYKRLI GMLPEVYVGK
201: TERLKSLIKI LCTAAKKCMK DKKMHMGPWR KHKYMQAKWF GTCERKSVSP VSETEENMFP VAKQRVSMLN YGLFGAGIGR PTVVAVV
Arabidopsis Description
AT4g32480/F8B4_180 [Source:UniProtKB/TrEMBL;Acc:Q9SUU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.