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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400033381 Potato cytosol, mitochondrion, nucleus 93.75 93.14
Solyc02g078160.2.1 Tomato nucleus 65.46 65.89
Solyc02g078150.2.1 Tomato nucleus 64.47 63.64
VIT_00s0265g00090.t01 Wine grape mitochondrion 53.62 52.75
KRH10888 Soybean mitochondrion 50.66 51.33
KRH21430 Soybean mitochondrion, nucleus 49.01 49.34
KRH20449 Soybean mitochondrion 52.3 48.33
KRH50053 Soybean mitochondrion 50.0 47.2
GSMUA_Achr7P24960_001 Banana cytosol 39.8 44.16
GSMUA_Achr3P31780_001 Banana cytosol 40.46 42.86
GSMUA_Achr4P02600_001 Banana nucleus 39.14 42.81
Solyc07g053900.2.1 Tomato cytosol 43.75 41.56
TraesCS3B01G307800.1 Wheat nucleus 37.17 40.5
Zm00001d043444_P001 Maize nucleus 37.5 40.14
HORVU3Hr1G071220.1 Barley nucleus 34.54 40.08
EES01469 Sorghum nucleus 37.17 40.07
TraesCS3A01G274100.1 Wheat nucleus 35.2 38.35
TraesCS3D01G273300.1 Wheat nucleus 34.87 38.27
HORVU1Hr1G076120.1 Barley nucleus 33.22 35.94
EES19824 Sorghum cytosol 34.21 34.55
Os05t0519300-01 Rice cytosol 34.54 34.31
TraesCS1D01G341700.1 Wheat cytosol 32.57 34.14
TraesCS1A01G339700.1 Wheat cytosol 32.57 34.02
TraesCS1B01G352000.1 Wheat nucleus 31.58 33.57
Solyc11g042630.1.1 Tomato cytosol 24.01 25.7
Solyc06g054640.1.1 Tomato cytosol 18.09 24.77
Solyc09g057760.2.1 Tomato nucleus 15.79 22.22
Solyc06g007580.1.1 Tomato nucleus 21.05 21.4
Solyc06g083160.1.1 Tomato nucleus 20.39 21.16
Solyc11g012120.1.1 Tomato cytosol 19.74 20.2
Solyc06g053910.2.1 Tomato cytosol, plastid 24.34 19.02
Solyc06g005480.2.1 Tomato cytosol 19.41 18.91
Solyc09g082980.2.1 Tomato nucleus 24.34 18.59
Solyc09g065760.2.1 Tomato cytosol, plastid 23.68 16.55
Protein Annotations
EnsemblPlants:Solyc03g006410.2.1EnsemblPlantsGene:Solyc03g006410.2InterPro:PDDEXK-likePANTHER:PTHR31579PANTHER:PTHR31579:SF2PFAM:PF04720
SEG:segTIGRFAMs:TIGR01615UniParc:UPI00027679B0UniProt:K4BE64MapMan:35.2:
Description
No Description!
Coordinates
chr3:+:1009242..1011978
Molecular Weight (calculated)
34983.2 Da
IEP (calculated)
6.617
GRAVY (calculated)
-0.424
Length
304 amino acids
Sequence
(BLAST)
001: MARRTMSHRI LTCDKLEIVT FSGDPASINI SDTIFGFFDN ESLKSIHLDF CEHNENIDDE GEEKDESENV EENQFWETQH QLLQGVLYRT TSLESQIRSI
101: TKEAIKEGNE IICSCRRTLD DGCKTCLMKE VCSRLQIAGF NSVICKSKWK NSLDIPSGEH TFIDVIDLSN PKKGEVRVII ELNFRAEFEM ARGCEEYNRL
201: VKNLPEVFIG KIERLLSLIK ILCAAAKKCM KDKKMHIGPW RKQKYMQAKW LKTRERVEAA KLTYSSSMDE YSSRPPPRPR ASMLTVDLLE NLPNLHLITA
301: VEVL
Best Arabidopsis Sequence Match ( AT2G20670.1 )
(BLAST)
001: MDRQNSDDIM RFLDGMASSD DVLFGFLDEG NQSPEDFSVN LNAGEDDGDE DDNNNNSEDN KAFWQEHEQL LQGTLYRTSS IETKIRQATK EALKQVKSKG
101: LYCVCRRPVD GGCRSCLRGE ISRHLRDVAG YDCVISKSKW RSCQDIPAGE HEFIEIVDRS GSKKSEMRVV IELSFRAEFE IAKGSEEYKR LISRLPEVYV
201: GKTERLRSLI KILCIAGKKC LRDKKMHMAP WRKHKYMQAK WLGTCDRSSS LEASVSEAME PENWVPVAKP RVSMLNYDGL LGGFSAGPAT VAVV
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.